Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Vps28Q9D1C8 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Vps28Q9D1C8 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
Vps28Q9D1C8 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Vps28Q9D1C8 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Vps28Q9D1C8 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
Vps28Q9D1C8 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
Vps28Q9D1C8 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
Vps28Q9D1C8 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Vps28Q9D1C8 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Vps28Q9D1C8 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Vps28Q9D1C8 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC21.4■■□□□ 1.02
Vps28Q9D1C8 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC21.4■■□□□ 1.02
Vps28Q9D1C8 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
Vps28Q9D1C8 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Vps28Q9D1C8 Gm20634-201ENSMUST00000090779 2956 ntBASIC21.4■■□□□ 1.02
Vps28Q9D1C8 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
Vps28Q9D1C8 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Vps28Q9D1C8 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Vps28Q9D1C8 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
Vps28Q9D1C8 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Vps28Q9D1C8 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Vps28Q9D1C8 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC21.39■■□□□ 1.01
Vps28Q9D1C8 AC116713.1-201ENSMUST00000215074 430 ntBASIC21.39■■□□□ 1.01
Vps28Q9D1C8 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
Vps28Q9D1C8 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
Vps28Q9D1C8 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Vps28Q9D1C8 Gm10620-201ENSMUST00000098379 1332 ntBASIC21.38■■□□□ 1.01
Vps28Q9D1C8 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Vps28Q9D1C8 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC21.38■■□□□ 1.01
Vps28Q9D1C8 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC21.38■■□□□ 1.01
Vps28Q9D1C8 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Vps28Q9D1C8 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Vps28Q9D1C8 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Vps28Q9D1C8 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
Vps28Q9D1C8 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Vps28Q9D1C8 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Vps28Q9D1C8 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Vps28Q9D1C8 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
Vps28Q9D1C8 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC21.37■■□□□ 1.01
Vps28Q9D1C8 Gm38160-201ENSMUST00000193090 2499 ntBASIC21.37■■□□□ 1.01
Vps28Q9D1C8 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC21.37■■□□□ 1.01
Vps28Q9D1C8 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC21.37■■□□□ 1.01
Vps28Q9D1C8 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Vps28Q9D1C8 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Vps28Q9D1C8 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Vps28Q9D1C8 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC21.36■■□□□ 1.01
Vps28Q9D1C8 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Vps28Q9D1C8 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC21.36■■□□□ 1.01
Vps28Q9D1C8 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC21.36■■□□□ 1.01
Vps28Q9D1C8 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC21.36■■□□□ 1.01
Vps28Q9D1C8 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Vps28Q9D1C8 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Vps28Q9D1C8 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Vps28Q9D1C8 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Vps28Q9D1C8 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC21.34■■□□□ 1.01
Vps28Q9D1C8 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Vps28Q9D1C8 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Vps28Q9D1C8 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Vps28Q9D1C8 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Vps28Q9D1C8 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Vps28Q9D1C8 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Vps28Q9D1C8 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Vps28Q9D1C8 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Vps28Q9D1C8 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
Vps28Q9D1C8 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC21.33■■□□□ 1.01
Vps28Q9D1C8 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Vps28Q9D1C8 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
Vps28Q9D1C8 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
Vps28Q9D1C8 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Vps28Q9D1C8 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Vps28Q9D1C8 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC21.32■■□□□ 1
Vps28Q9D1C8 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Vps28Q9D1C8 AC153962.1-201ENSMUST00000218530 1948 ntBASIC21.32■■□□□ 1
Vps28Q9D1C8 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC21.32■■□□□ 1
Vps28Q9D1C8 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Vps28Q9D1C8 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Vps28Q9D1C8 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Vps28Q9D1C8 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Vps28Q9D1C8 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Vps28Q9D1C8 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Vps28Q9D1C8 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC21.31■■□□□ 1
Vps28Q9D1C8 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Vps28Q9D1C8 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Vps28Q9D1C8 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Vps28Q9D1C8 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Vps28Q9D1C8 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Vps28Q9D1C8 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Vps28Q9D1C8 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC21.3■■□□□ 1
Vps28Q9D1C8 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC21.3■■□□□ 1
Vps28Q9D1C8 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC21.3■■□□□ 1
Vps28Q9D1C8 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Vps28Q9D1C8 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC21.3■■□□□ 1
Vps28Q9D1C8 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC21.3■■□□□ 1
Vps28Q9D1C8 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Vps28Q9D1C8 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Vps28Q9D1C8 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Vps28Q9D1C8 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
Vps28Q9D1C8 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC21.29■■□□□ 1
Vps28Q9D1C8 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 43.3 ms