Protein–RNA interactions for Protein: A0A0J9YTW6

Scn2a, Sodium channel protein, mousemouse

Predictions only

Length 2,006 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn2aA0A0J9YTW6 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn2aA0A0J9YTW6 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn2aA0A0J9YTW6 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn2aA0A0J9YTW6 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn2aA0A0J9YTW6 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn2aA0A0J9YTW6 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn2aA0A0J9YTW6 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn2aA0A0J9YTW6 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn2aA0A0J9YTW6 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC19.25■□□□□ 0.67
Scn2aA0A0J9YTW6 Gm7417-201ENSMUST00000192950 473 ntBASIC19.25■□□□□ 0.67
Scn2aA0A0J9YTW6 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC19.25■□□□□ 0.67
Scn2aA0A0J9YTW6 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn2aA0A0J9YTW6 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn2aA0A0J9YTW6 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Scn2aA0A0J9YTW6 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Scn2aA0A0J9YTW6 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scn2aA0A0J9YTW6 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scn2aA0A0J9YTW6 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC19.24■□□□□ 0.67
Scn2aA0A0J9YTW6 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scn2aA0A0J9YTW6 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Scn2aA0A0J9YTW6 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Scn2aA0A0J9YTW6 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC19.24■□□□□ 0.67
Scn2aA0A0J9YTW6 AC116713.1-201ENSMUST00000215074 430 ntBASIC19.24■□□□□ 0.67
Scn2aA0A0J9YTW6 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn2aA0A0J9YTW6 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn2aA0A0J9YTW6 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn2aA0A0J9YTW6 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Scn2aA0A0J9YTW6 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC19.23■□□□□ 0.67
Scn2aA0A0J9YTW6 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Scn2aA0A0J9YTW6 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn2aA0A0J9YTW6 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scn2aA0A0J9YTW6 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Scn2aA0A0J9YTW6 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scn2aA0A0J9YTW6 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC19.22■□□□□ 0.67
Scn2aA0A0J9YTW6 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Scn2aA0A0J9YTW6 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Scn2aA0A0J9YTW6 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scn2aA0A0J9YTW6 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Scn2aA0A0J9YTW6 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Scn2aA0A0J9YTW6 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scn2aA0A0J9YTW6 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scn2aA0A0J9YTW6 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scn2aA0A0J9YTW6 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Scn2aA0A0J9YTW6 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scn2aA0A0J9YTW6 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scn2aA0A0J9YTW6 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC19.2■□□□□ 0.66
Scn2aA0A0J9YTW6 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scn2aA0A0J9YTW6 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Scn2aA0A0J9YTW6 Etf1-202ENSMUST00000180351 108 ntBASIC19.2■□□□□ 0.66
Scn2aA0A0J9YTW6 Gm40881-201ENSMUST00000223397 166 ntBASIC19.2■□□□□ 0.66
Scn2aA0A0J9YTW6 Gm6277-202ENSMUST00000224036 2779 ntBASIC19.2■□□□□ 0.66
Scn2aA0A0J9YTW6 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scn2aA0A0J9YTW6 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scn2aA0A0J9YTW6 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Scn2aA0A0J9YTW6 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Scn2aA0A0J9YTW6 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Scn2aA0A0J9YTW6 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scn2aA0A0J9YTW6 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scn2aA0A0J9YTW6 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scn2aA0A0J9YTW6 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Scn2aA0A0J9YTW6 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scn2aA0A0J9YTW6 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scn2aA0A0J9YTW6 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC19.18■□□□□ 0.66
Scn2aA0A0J9YTW6 Gm22238-201ENSMUST00000175222 88 ntBASIC19.18■□□□□ 0.66
Scn2aA0A0J9YTW6 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Scn2aA0A0J9YTW6 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC19.18■□□□□ 0.66
Scn2aA0A0J9YTW6 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Scn2aA0A0J9YTW6 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Scn2aA0A0J9YTW6 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
Scn2aA0A0J9YTW6 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC19.17■□□□□ 0.66
Scn2aA0A0J9YTW6 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Scn2aA0A0J9YTW6 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Scn2aA0A0J9YTW6 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC19.17■□□□□ 0.66
Scn2aA0A0J9YTW6 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Scn2aA0A0J9YTW6 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Scn2aA0A0J9YTW6 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Scn2aA0A0J9YTW6 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Scn2aA0A0J9YTW6 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Scn2aA0A0J9YTW6 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Scn2aA0A0J9YTW6 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC19.17■□□□□ 0.66
Scn2aA0A0J9YTW6 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Scn2aA0A0J9YTW6 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Scn2aA0A0J9YTW6 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn2aA0A0J9YTW6 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn2aA0A0J9YTW6 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn2aA0A0J9YTW6 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Scn2aA0A0J9YTW6 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Scn2aA0A0J9YTW6 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Scn2aA0A0J9YTW6 Gm42418-201ENSMUST00000182010 1831 ntBASIC19.16■□□□□ 0.66
Scn2aA0A0J9YTW6 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn2aA0A0J9YTW6 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Scn2aA0A0J9YTW6 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC19.15■□□□□ 0.66
Scn2aA0A0J9YTW6 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Scn2aA0A0J9YTW6 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
Scn2aA0A0J9YTW6 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC19.15■□□□□ 0.66
Scn2aA0A0J9YTW6 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Scn2aA0A0J9YTW6 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Scn2aA0A0J9YTW6 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Scn2aA0A0J9YTW6 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Scn2aA0A0J9YTW6 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 63 ms