Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Cdh11P55288 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Cdh11P55288 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Cdh11P55288 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Cdh11P55288 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Cdh11P55288 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Cdh11P55288 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Cdh11P55288 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Cdh11P55288 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC19.03■□□□□ 0.64
Cdh11P55288 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Cdh11P55288 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Cdh11P55288 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Cdh11P55288 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
Cdh11P55288 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Cdh11P55288 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC19.03■□□□□ 0.64
Cdh11P55288 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Cdh11P55288 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
Cdh11P55288 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Cdh11P55288 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Cdh11P55288 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
Cdh11P55288 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Cdh11P55288 Gm42418-201ENSMUST00000182010 1831 ntBASIC19.02■□□□□ 0.63
Cdh11P55288 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Cdh11P55288 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
Cdh11P55288 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Cdh11P55288 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Cdh11P55288 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Cdh11P55288 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Cdh11P55288 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Cdh11P55288 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Cdh11P55288 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Cdh11P55288 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Cdh11P55288 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Cdh11P55288 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Cdh11P55288 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Cdh11P55288 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Cdh11P55288 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Cdh11P55288 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Cdh11P55288 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Cdh11P55288 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Cdh11P55288 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Cdh11P55288 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Cdh11P55288 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC19■□□□□ 0.63
Cdh11P55288 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC18.99■□□□□ 0.63
Cdh11P55288 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Cdh11P55288 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Cdh11P55288 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Cdh11P55288 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Cdh11P55288 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Cdh11P55288 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cdh11P55288 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cdh11P55288 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Cdh11P55288 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cdh11P55288 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cdh11P55288 Gm43592-201ENSMUST00000196922 1165 ntBASIC18.98■□□□□ 0.63
Cdh11P55288 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC18.98■□□□□ 0.63
Cdh11P55288 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
Cdh11P55288 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cdh11P55288 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cdh11P55288 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Cdh11P55288 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
Cdh11P55288 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Cdh11P55288 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Cdh11P55288 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC18.97■□□□□ 0.63
Cdh11P55288 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cdh11P55288 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cdh11P55288 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cdh11P55288 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Cdh11P55288 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC18.96■□□□□ 0.63
Cdh11P55288 Gm5812-201ENSMUST00000061073 957 ntBASIC18.96■□□□□ 0.63
Cdh11P55288 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cdh11P55288 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cdh11P55288 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cdh11P55288 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cdh11P55288 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Cdh11P55288 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Cdh11P55288 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cdh11P55288 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Cdh11P55288 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Cdh11P55288 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC18.95■□□□□ 0.62
Cdh11P55288 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cdh11P55288 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Cdh11P55288 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC18.95■□□□□ 0.62
Cdh11P55288 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cdh11P55288 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Cdh11P55288 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
Cdh11P55288 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
Cdh11P55288 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
Cdh11P55288 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
Cdh11P55288 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cdh11P55288 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC18.94■□□□□ 0.62
Cdh11P55288 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cdh11P55288 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
Cdh11P55288 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cdh11P55288 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cdh11P55288 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC18.93■□□□□ 0.62
Cdh11P55288 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cdh11P55288 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC18.93■□□□□ 0.62
Cdh11P55288 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cdh11P55288 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 65.8 ms