Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv1A0A0B4J1G7 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv1A0A0B4J1G7 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv1A0A0B4J1G7 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv1A0A0B4J1G7 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Trbv1A0A0B4J1G7 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Trbv1A0A0B4J1G7 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trbv1A0A0B4J1G7 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trbv1A0A0B4J1G7 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trbv1A0A0B4J1G7 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trbv1A0A0B4J1G7 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Trbv1A0A0B4J1G7 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trbv1A0A0B4J1G7 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trbv1A0A0B4J1G7 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trbv1A0A0B4J1G7 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trbv1A0A0B4J1G7 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC16.38■□□□□ 0.21
Trbv1A0A0B4J1G7 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Trbv1A0A0B4J1G7 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trbv1A0A0B4J1G7 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
Trbv1A0A0B4J1G7 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC16.38■□□□□ 0.21
Trbv1A0A0B4J1G7 Gm11687-201ENSMUST00000118911 886 ntBASIC16.38■□□□□ 0.21
Trbv1A0A0B4J1G7 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trbv1A0A0B4J1G7 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Trbv1A0A0B4J1G7 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trbv1A0A0B4J1G7 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trbv1A0A0B4J1G7 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trbv1A0A0B4J1G7 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC16.37■□□□□ 0.21
Trbv1A0A0B4J1G7 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Trbv1A0A0B4J1G7 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Trbv1A0A0B4J1G7 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trbv1A0A0B4J1G7 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trbv1A0A0B4J1G7 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trbv1A0A0B4J1G7 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trbv1A0A0B4J1G7 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trbv1A0A0B4J1G7 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trbv1A0A0B4J1G7 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trbv1A0A0B4J1G7 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Trbv1A0A0B4J1G7 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Trbv1A0A0B4J1G7 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trbv1A0A0B4J1G7 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trbv1A0A0B4J1G7 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trbv1A0A0B4J1G7 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trbv1A0A0B4J1G7 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Trbv1A0A0B4J1G7 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC16.36■□□□□ 0.21
Trbv1A0A0B4J1G7 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trbv1A0A0B4J1G7 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trbv1A0A0B4J1G7 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Trbv1A0A0B4J1G7 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trbv1A0A0B4J1G7 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trbv1A0A0B4J1G7 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trbv1A0A0B4J1G7 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trbv1A0A0B4J1G7 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trbv1A0A0B4J1G7 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trbv1A0A0B4J1G7 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
Trbv1A0A0B4J1G7 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trbv1A0A0B4J1G7 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC16.35■□□□□ 0.21
Trbv1A0A0B4J1G7 Gm16437-201ENSMUST00000025669 507 ntBASIC16.35■□□□□ 0.21
Trbv1A0A0B4J1G7 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Trbv1A0A0B4J1G7 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trbv1A0A0B4J1G7 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trbv1A0A0B4J1G7 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trbv1A0A0B4J1G7 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trbv1A0A0B4J1G7 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trbv1A0A0B4J1G7 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC16.35■□□□□ 0.21
Trbv1A0A0B4J1G7 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Trbv1A0A0B4J1G7 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trbv1A0A0B4J1G7 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trbv1A0A0B4J1G7 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trbv1A0A0B4J1G7 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trbv1A0A0B4J1G7 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trbv1A0A0B4J1G7 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trbv1A0A0B4J1G7 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trbv1A0A0B4J1G7 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trbv1A0A0B4J1G7 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
Trbv1A0A0B4J1G7 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trbv1A0A0B4J1G7 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trbv1A0A0B4J1G7 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trbv1A0A0B4J1G7 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trbv1A0A0B4J1G7 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC16.33■□□□□ 0.2
Trbv1A0A0B4J1G7 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trbv1A0A0B4J1G7 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trbv1A0A0B4J1G7 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trbv1A0A0B4J1G7 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trbv1A0A0B4J1G7 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC16.32■□□□□ 0.2
Trbv1A0A0B4J1G7 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Trbv1A0A0B4J1G7 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trbv1A0A0B4J1G7 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trbv1A0A0B4J1G7 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Trbv1A0A0B4J1G7 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Trbv1A0A0B4J1G7 AC164433.2-201ENSMUST00000226346 1701 ntBASIC16.31■□□□□ 0.2
Trbv1A0A0B4J1G7 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Trbv1A0A0B4J1G7 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trbv1A0A0B4J1G7 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Trbv1A0A0B4J1G7 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trbv1A0A0B4J1G7 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trbv1A0A0B4J1G7 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Trbv1A0A0B4J1G7 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC16.31■□□□□ 0.2
Trbv1A0A0B4J1G7 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trbv1A0A0B4J1G7 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Trbv1A0A0B4J1G7 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 15.6 ms