Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Ddx56Q9D0R4 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Ddx56Q9D0R4 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Ddx56Q9D0R4 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
Ddx56Q9D0R4 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Ddx56Q9D0R4 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC22.3■■□□□ 1.16
Ddx56Q9D0R4 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC22.3■■□□□ 1.16
Ddx56Q9D0R4 Nsd1-203ENSMUST00000224156 1149 ntBASIC22.3■■□□□ 1.16
Ddx56Q9D0R4 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Ddx56Q9D0R4 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC22.3■■□□□ 1.16
Ddx56Q9D0R4 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Ddx56Q9D0R4 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Ddx56Q9D0R4 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC22.29■■□□□ 1.16
Ddx56Q9D0R4 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Ddx56Q9D0R4 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC22.29■■□□□ 1.16
Ddx56Q9D0R4 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Ddx56Q9D0R4 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC22.29■■□□□ 1.16
Ddx56Q9D0R4 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
Ddx56Q9D0R4 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Ddx56Q9D0R4 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Ddx56Q9D0R4 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
Ddx56Q9D0R4 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Ddx56Q9D0R4 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Ddx56Q9D0R4 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC22.28■■□□□ 1.16
Ddx56Q9D0R4 Gm32051-202ENSMUST00000197905 2385 ntBASIC22.28■■□□□ 1.16
Ddx56Q9D0R4 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
Ddx56Q9D0R4 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Ddx56Q9D0R4 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC22.28■■□□□ 1.16
Ddx56Q9D0R4 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Ddx56Q9D0R4 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Ddx56Q9D0R4 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
Ddx56Q9D0R4 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
Ddx56Q9D0R4 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Ddx56Q9D0R4 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Ddx56Q9D0R4 Gm13042-201ENSMUST00000119244 1955 ntBASIC22.27■■□□□ 1.16
Ddx56Q9D0R4 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
Ddx56Q9D0R4 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Ddx56Q9D0R4 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Ddx56Q9D0R4 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Ddx56Q9D0R4 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Ddx56Q9D0R4 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC22.27■■□□□ 1.16
Ddx56Q9D0R4 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC22.27■■□□□ 1.16
Ddx56Q9D0R4 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Ddx56Q9D0R4 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Ddx56Q9D0R4 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC22.26■■□□□ 1.15
Ddx56Q9D0R4 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Ddx56Q9D0R4 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Ddx56Q9D0R4 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
Ddx56Q9D0R4 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC22.25■■□□□ 1.15
Ddx56Q9D0R4 Gm45444-201ENSMUST00000211394 898 ntBASIC22.25■■□□□ 1.15
Ddx56Q9D0R4 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
Ddx56Q9D0R4 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Ddx56Q9D0R4 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC22.25■■□□□ 1.15
Ddx56Q9D0R4 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Ddx56Q9D0R4 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Ddx56Q9D0R4 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Ddx56Q9D0R4 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Ddx56Q9D0R4 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Ddx56Q9D0R4 Gm28536-201ENSMUST00000190971 1317 ntBASIC22.24■■□□□ 1.15
Ddx56Q9D0R4 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Ddx56Q9D0R4 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
Ddx56Q9D0R4 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Ddx56Q9D0R4 Gm5921-201ENSMUST00000075898 882 ntBASIC22.23■■□□□ 1.15
Ddx56Q9D0R4 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC22.23■■□□□ 1.15
Ddx56Q9D0R4 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Ddx56Q9D0R4 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Ddx56Q9D0R4 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC22.22■■□□□ 1.15
Ddx56Q9D0R4 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC22.22■■□□□ 1.15
Ddx56Q9D0R4 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC22.22■■□□□ 1.15
Ddx56Q9D0R4 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Ddx56Q9D0R4 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Ddx56Q9D0R4 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
Ddx56Q9D0R4 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
Ddx56Q9D0R4 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Ddx56Q9D0R4 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Ddx56Q9D0R4 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC22.21■■□□□ 1.15
Ddx56Q9D0R4 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Ddx56Q9D0R4 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Ddx56Q9D0R4 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Ddx56Q9D0R4 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
Ddx56Q9D0R4 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC22.2■■□□□ 1.14
Ddx56Q9D0R4 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Ddx56Q9D0R4 Gm11847-201ENSMUST00000125165 1119 ntBASIC22.2■■□□□ 1.14
Ddx56Q9D0R4 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC22.2■■□□□ 1.14
Ddx56Q9D0R4 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC22.2■■□□□ 1.14
Ddx56Q9D0R4 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC22.2■■□□□ 1.14
Ddx56Q9D0R4 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC22.2■■□□□ 1.14
Ddx56Q9D0R4 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Ddx56Q9D0R4 AC116713.1-201ENSMUST00000215074 430 ntBASIC22.19■■□□□ 1.14
Ddx56Q9D0R4 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
Ddx56Q9D0R4 AC158990.1-201ENSMUST00000221450 2016 ntBASIC22.19■■□□□ 1.14
Ddx56Q9D0R4 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Ddx56Q9D0R4 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Ddx56Q9D0R4 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
Ddx56Q9D0R4 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Ddx56Q9D0R4 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Ddx56Q9D0R4 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Ddx56Q9D0R4 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Ddx56Q9D0R4 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Ddx56Q9D0R4 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms