Protein–RNA interactions for Protein: P32958

Rom1, Rod outer segment membrane protein 1, mousemouse

Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rom1P32958 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
Rom1P32958 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rom1P32958 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rom1P32958 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Rom1P32958 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Rom1P32958 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rom1P32958 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rom1P32958 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rom1P32958 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rom1P32958 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rom1P32958 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
Rom1P32958 Mir3960-201ENSMUST00000198213 73 ntBASIC16.72■□□□□ 0.27
Rom1P32958 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rom1P32958 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Rom1P32958 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Rom1P32958 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rom1P32958 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Rom1P32958 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Rom1P32958 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Rom1P32958 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Rom1P32958 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC16.71■□□□□ 0.27
Rom1P32958 AC154454.1-201ENSMUST00000225253 216 ntBASIC16.71■□□□□ 0.27
Rom1P32958 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Rom1P32958 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Rom1P32958 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Rom1P32958 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Rom1P32958 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC16.71■□□□□ 0.26
Rom1P32958 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rom1P32958 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
Rom1P32958 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rom1P32958 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Rom1P32958 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rom1P32958 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC16.7■□□□□ 0.26
Rom1P32958 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rom1P32958 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rom1P32958 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Rom1P32958 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rom1P32958 Kdm3b-204ENSMUST00000224715 2032 ntBASIC16.7■□□□□ 0.26
Rom1P32958 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Rom1P32958 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Rom1P32958 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Rom1P32958 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Rom1P32958 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Rom1P32958 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Rom1P32958 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Rom1P32958 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Rom1P32958 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Rom1P32958 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Rom1P32958 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Rom1P32958 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Rom1P32958 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Rom1P32958 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC16.68■□□□□ 0.26
Rom1P32958 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC16.68■□□□□ 0.26
Rom1P32958 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Rom1P32958 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Rom1P32958 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Rom1P32958 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Rom1P32958 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Rom1P32958 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Rom1P32958 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Rom1P32958 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Rom1P32958 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
Rom1P32958 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Rom1P32958 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Rom1P32958 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Rom1P32958 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Rom1P32958 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Rom1P32958 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Rom1P32958 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC16.66■□□□□ 0.26
Rom1P32958 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Rom1P32958 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
Rom1P32958 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Rom1P32958 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Rom1P32958 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Rom1P32958 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Rom1P32958 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Rom1P32958 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Rom1P32958 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Rom1P32958 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Rom1P32958 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Rom1P32958 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Rom1P32958 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Rom1P32958 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
Rom1P32958 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC16.65■□□□□ 0.26
Rom1P32958 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC16.65■□□□□ 0.26
Rom1P32958 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Rom1P32958 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Rom1P32958 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Rom1P32958 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Rom1P32958 Gm10616-201ENSMUST00000205285 2127 ntBASIC16.64■□□□□ 0.25
Rom1P32958 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Rom1P32958 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Rom1P32958 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Rom1P32958 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Rom1P32958 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
Rom1P32958 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Rom1P32958 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Rom1P32958 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Rom1P32958 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Rom1P32958 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms