Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
Pcdha4O88689 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Pcdha4O88689 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Pcdha4O88689 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Pcdha4O88689 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC23.77■■□□□ 1.4
Pcdha4O88689 AC158990.1-201ENSMUST00000221450 2016 ntBASIC23.77■■□□□ 1.4
Pcdha4O88689 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC23.76■■□□□ 1.39
Pcdha4O88689 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
Pcdha4O88689 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Pcdha4O88689 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Pcdha4O88689 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC23.76■■□□□ 1.39
Pcdha4O88689 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Pcdha4O88689 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC23.75■■□□□ 1.39
Pcdha4O88689 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Pcdha4O88689 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Pcdha4O88689 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Pcdha4O88689 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Pcdha4O88689 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC23.74■■□□□ 1.39
Pcdha4O88689 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Pcdha4O88689 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Pcdha4O88689 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Pcdha4O88689 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
Pcdha4O88689 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Pcdha4O88689 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Pcdha4O88689 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Pcdha4O88689 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
Pcdha4O88689 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Pcdha4O88689 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC23.72■■□□□ 1.39
Pcdha4O88689 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Pcdha4O88689 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
Pcdha4O88689 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC23.72■■□□□ 1.39
Pcdha4O88689 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Pcdha4O88689 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
Pcdha4O88689 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
Pcdha4O88689 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Pcdha4O88689 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC23.71■■□□□ 1.39
Pcdha4O88689 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Pcdha4O88689 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Pcdha4O88689 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Pcdha4O88689 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Pcdha4O88689 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Pcdha4O88689 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
Pcdha4O88689 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC23.7■■□□□ 1.38
Pcdha4O88689 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC23.7■■□□□ 1.38
Pcdha4O88689 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Pcdha4O88689 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
Pcdha4O88689 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Pcdha4O88689 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Pcdha4O88689 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Pcdha4O88689 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Pcdha4O88689 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Pcdha4O88689 Gm42418-201ENSMUST00000182010 1831 ntBASIC23.69■■□□□ 1.38
Pcdha4O88689 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC23.69■■□□□ 1.38
Pcdha4O88689 Gm10399-202ENSMUST00000202768 748 ntBASIC23.69■■□□□ 1.38
Pcdha4O88689 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC23.69■■□□□ 1.38
Pcdha4O88689 AC093043.1-201ENSMUST00000226700 898 ntBASIC23.69■■□□□ 1.38
Pcdha4O88689 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Pcdha4O88689 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Pcdha4O88689 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Pcdha4O88689 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Pcdha4O88689 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
Pcdha4O88689 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC23.68■■□□□ 1.38
Pcdha4O88689 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC23.68■■□□□ 1.38
Pcdha4O88689 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC23.68■■□□□ 1.38
Pcdha4O88689 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Pcdha4O88689 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Pcdha4O88689 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Pcdha4O88689 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
Pcdha4O88689 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Pcdha4O88689 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Pcdha4O88689 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Pcdha4O88689 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Pcdha4O88689 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Pcdha4O88689 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
Pcdha4O88689 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
Pcdha4O88689 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Pcdha4O88689 Gm5131-201ENSMUST00000212776 1238 ntBASIC23.66■■□□□ 1.38
Pcdha4O88689 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Pcdha4O88689 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Pcdha4O88689 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
Pcdha4O88689 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Pcdha4O88689 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
Pcdha4O88689 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Pcdha4O88689 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
Pcdha4O88689 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Pcdha4O88689 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC23.64■■□□□ 1.38
Pcdha4O88689 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Pcdha4O88689 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Pcdha4O88689 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Pcdha4O88689 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC23.63■■□□□ 1.37
Pcdha4O88689 Gm26766-202ENSMUST00000227544 2347 ntBASIC23.63■■□□□ 1.37
Pcdha4O88689 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC23.63■■□□□ 1.37
Pcdha4O88689 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Pcdha4O88689 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
Pcdha4O88689 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC23.62■■□□□ 1.37
Pcdha4O88689 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC23.62■■□□□ 1.37
Pcdha4O88689 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
Pcdha4O88689 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC23.62■■□□□ 1.37
Pcdha4O88689 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC23.62■■□□□ 1.37
Pcdha4O88689 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC23.62■■□□□ 1.37
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms