Protein–RNA interactions for Protein: A0A0B4J1K1

Trav4-3, T cell receptor alpha variable 4-3 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav4-3A0A0B4J1K1 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Trav4-3A0A0B4J1K1 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trav4-3A0A0B4J1K1 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trav4-3A0A0B4J1K1 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trav4-3A0A0B4J1K1 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trav4-3A0A0B4J1K1 Kdm3b-204ENSMUST00000224715 2032 ntBASIC14.42□□□□□ -0.1
Trav4-3A0A0B4J1K1 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trav4-3A0A0B4J1K1 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trav4-3A0A0B4J1K1 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trav4-3A0A0B4J1K1 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trav4-3A0A0B4J1K1 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trav4-3A0A0B4J1K1 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Trav4-3A0A0B4J1K1 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC14.42□□□□□ -0.1
Trav4-3A0A0B4J1K1 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trav4-3A0A0B4J1K1 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
Trav4-3A0A0B4J1K1 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trav4-3A0A0B4J1K1 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
Trav4-3A0A0B4J1K1 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Trav4-3A0A0B4J1K1 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trav4-3A0A0B4J1K1 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC14.41□□□□□ -0.1
Trav4-3A0A0B4J1K1 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trav4-3A0A0B4J1K1 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trav4-3A0A0B4J1K1 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC14.41□□□□□ -0.1
Trav4-3A0A0B4J1K1 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trav4-3A0A0B4J1K1 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC14.41□□□□□ -0.1
Trav4-3A0A0B4J1K1 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trav4-3A0A0B4J1K1 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Trav4-3A0A0B4J1K1 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trav4-3A0A0B4J1K1 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trav4-3A0A0B4J1K1 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC14.4□□□□□ -0.1
Trav4-3A0A0B4J1K1 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trav4-3A0A0B4J1K1 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trav4-3A0A0B4J1K1 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
Trav4-3A0A0B4J1K1 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trav4-3A0A0B4J1K1 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trav4-3A0A0B4J1K1 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trav4-3A0A0B4J1K1 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Trav4-3A0A0B4J1K1 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC14.4□□□□□ -0.1
Trav4-3A0A0B4J1K1 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC14.4□□□□□ -0.11
Trav4-3A0A0B4J1K1 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Trav4-3A0A0B4J1K1 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trav4-3A0A0B4J1K1 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trav4-3A0A0B4J1K1 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Trav4-3A0A0B4J1K1 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Trav4-3A0A0B4J1K1 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
Trav4-3A0A0B4J1K1 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC14.39□□□□□ -0.11
Trav4-3A0A0B4J1K1 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC14.39□□□□□ -0.11
Trav4-3A0A0B4J1K1 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
Trav4-3A0A0B4J1K1 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Trav4-3A0A0B4J1K1 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trav4-3A0A0B4J1K1 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav4-3A0A0B4J1K1 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav4-3A0A0B4J1K1 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav4-3A0A0B4J1K1 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav4-3A0A0B4J1K1 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav4-3A0A0B4J1K1 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav4-3A0A0B4J1K1 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav4-3A0A0B4J1K1 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav4-3A0A0B4J1K1 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Trav4-3A0A0B4J1K1 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Trav4-3A0A0B4J1K1 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trav4-3A0A0B4J1K1 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav4-3A0A0B4J1K1 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav4-3A0A0B4J1K1 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trav4-3A0A0B4J1K1 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trav4-3A0A0B4J1K1 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC14.37□□□□□ -0.11
Trav4-3A0A0B4J1K1 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
Trav4-3A0A0B4J1K1 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trav4-3A0A0B4J1K1 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trav4-3A0A0B4J1K1 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Trav4-3A0A0B4J1K1 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Trav4-3A0A0B4J1K1 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Trav4-3A0A0B4J1K1 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav4-3A0A0B4J1K1 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Trav4-3A0A0B4J1K1 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav4-3A0A0B4J1K1 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav4-3A0A0B4J1K1 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC14.36□□□□□ -0.11
Trav4-3A0A0B4J1K1 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav4-3A0A0B4J1K1 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav4-3A0A0B4J1K1 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav4-3A0A0B4J1K1 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav4-3A0A0B4J1K1 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav4-3A0A0B4J1K1 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav4-3A0A0B4J1K1 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Trav4-3A0A0B4J1K1 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Trav4-3A0A0B4J1K1 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trav4-3A0A0B4J1K1 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trav4-3A0A0B4J1K1 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC14.35□□□□□ -0.11
Trav4-3A0A0B4J1K1 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trav4-3A0A0B4J1K1 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Trav4-3A0A0B4J1K1 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trav4-3A0A0B4J1K1 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Trav4-3A0A0B4J1K1 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trav4-3A0A0B4J1K1 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC14.34□□□□□ -0.11
Trav4-3A0A0B4J1K1 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
Trav4-3A0A0B4J1K1 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav4-3A0A0B4J1K1 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav4-3A0A0B4J1K1 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav4-3A0A0B4J1K1 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Trav4-3A0A0B4J1K1 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 171.5 ms