Protein–RNA interactions for Protein: S4R1E0

H2afb1, Histone H2A, mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H2afb1S4R1E0 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
H2afb1S4R1E0 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
H2afb1S4R1E0 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
H2afb1S4R1E0 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
H2afb1S4R1E0 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
H2afb1S4R1E0 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC24.52■■□□□ 1.52
H2afb1S4R1E0 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
H2afb1S4R1E0 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC24.51■■□□□ 1.51
H2afb1S4R1E0 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC24.47■■□□□ 1.51
H2afb1S4R1E0 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC24.43■■□□□ 1.5
H2afb1S4R1E0 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
H2afb1S4R1E0 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
H2afb1S4R1E0 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.49
H2afb1S4R1E0 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
H2afb1S4R1E0 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
H2afb1S4R1E0 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC24.35■■□□□ 1.49
H2afb1S4R1E0 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC24.25■■□□□ 1.47
H2afb1S4R1E0 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
H2afb1S4R1E0 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC24.24■■□□□ 1.47
H2afb1S4R1E0 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
H2afb1S4R1E0 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
H2afb1S4R1E0 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC24.21■■□□□ 1.47
H2afb1S4R1E0 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
H2afb1S4R1E0 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC24.21■■□□□ 1.47
H2afb1S4R1E0 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC24.2■■□□□ 1.46
H2afb1S4R1E0 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC24.18■■□□□ 1.46
H2afb1S4R1E0 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC24.18■■□□□ 1.46
H2afb1S4R1E0 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
H2afb1S4R1E0 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC24.15■■□□□ 1.46
H2afb1S4R1E0 Rab21-202ENSMUST00000218831 843 ntBASIC24.13■■□□□ 1.45
H2afb1S4R1E0 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
H2afb1S4R1E0 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
H2afb1S4R1E0 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
H2afb1S4R1E0 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
H2afb1S4R1E0 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
H2afb1S4R1E0 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC24.07■■□□□ 1.44
H2afb1S4R1E0 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
H2afb1S4R1E0 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
H2afb1S4R1E0 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
H2afb1S4R1E0 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
H2afb1S4R1E0 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
H2afb1S4R1E0 Zfp131-207ENSMUST00000224946 1783 ntBASIC23.98■■□□□ 1.43
H2afb1S4R1E0 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
H2afb1S4R1E0 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC23.96■■□□□ 1.43
H2afb1S4R1E0 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
H2afb1S4R1E0 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC23.93■■□□□ 1.42
H2afb1S4R1E0 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
H2afb1S4R1E0 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC23.91■■□□□ 1.42
H2afb1S4R1E0 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
H2afb1S4R1E0 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
H2afb1S4R1E0 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC23.89■■□□□ 1.41
H2afb1S4R1E0 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
H2afb1S4R1E0 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
H2afb1S4R1E0 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
H2afb1S4R1E0 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC23.85■■□□□ 1.41
H2afb1S4R1E0 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
H2afb1S4R1E0 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.4
H2afb1S4R1E0 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
H2afb1S4R1E0 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC23.77■■□□□ 1.4
H2afb1S4R1E0 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
H2afb1S4R1E0 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
H2afb1S4R1E0 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
H2afb1S4R1E0 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
H2afb1S4R1E0 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
H2afb1S4R1E0 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
H2afb1S4R1E0 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
H2afb1S4R1E0 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
H2afb1S4R1E0 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
H2afb1S4R1E0 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
H2afb1S4R1E0 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
H2afb1S4R1E0 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
H2afb1S4R1E0 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC23.66■■□□□ 1.38
H2afb1S4R1E0 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.38
H2afb1S4R1E0 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
H2afb1S4R1E0 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
H2afb1S4R1E0 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
H2afb1S4R1E0 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
H2afb1S4R1E0 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
H2afb1S4R1E0 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
H2afb1S4R1E0 Gm2415-204ENSMUST00000190235 2004 ntBASIC23.57■■□□□ 1.36
H2afb1S4R1E0 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC23.56■■□□□ 1.36
H2afb1S4R1E0 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
H2afb1S4R1E0 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
H2afb1S4R1E0 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
H2afb1S4R1E0 Gm25262-201ENSMUST00000174934 133 ntBASIC23.52■■□□□ 1.36
H2afb1S4R1E0 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
H2afb1S4R1E0 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC23.5■■□□□ 1.35
H2afb1S4R1E0 Zxda-201ENSMUST00000117281 2621 ntBASIC23.5■■□□□ 1.35
H2afb1S4R1E0 AC153504.1-201ENSMUST00000218379 2290 ntBASIC23.48■■□□□ 1.35
H2afb1S4R1E0 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
H2afb1S4R1E0 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
H2afb1S4R1E0 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC23.44■■□□□ 1.34
H2afb1S4R1E0 Gm6658-202ENSMUST00000209493 1885 ntBASIC23.43■■□□□ 1.34
H2afb1S4R1E0 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC23.42■■□□□ 1.34
H2afb1S4R1E0 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC23.41■■□□□ 1.34
H2afb1S4R1E0 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
H2afb1S4R1E0 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
H2afb1S4R1E0 AL845457.1-201ENSMUST00000197244 68 ntBASIC23.4■■□□□ 1.34
H2afb1S4R1E0 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC23.39■■□□□ 1.33
H2afb1S4R1E0 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
Retrieved 100 of 76,532 protein–RNA pairs in 89.1 ms