Protein–RNA interactions for Protein: P0C8K7

Smim1, Small integral membrane protein 1, mousemouse

Predictions only

Length 78 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smim1P0C8K7 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Smim1P0C8K7 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Smim1P0C8K7 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Smim1P0C8K7 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Smim1P0C8K7 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Smim1P0C8K7 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Smim1P0C8K7 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Smim1P0C8K7 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Smim1P0C8K7 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Smim1P0C8K7 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Smim1P0C8K7 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Smim1P0C8K7 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Smim1P0C8K7 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Smim1P0C8K7 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Smim1P0C8K7 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Smim1P0C8K7 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Smim1P0C8K7 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Smim1P0C8K7 Gm2415-204ENSMUST00000190235 2004 ntBASIC18.77■□□□□ 0.6
Smim1P0C8K7 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Smim1P0C8K7 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Smim1P0C8K7 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC18.75■□□□□ 0.59
Smim1P0C8K7 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Smim1P0C8K7 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Smim1P0C8K7 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Smim1P0C8K7 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Smim1P0C8K7 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Smim1P0C8K7 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Smim1P0C8K7 Gm9905-201ENSMUST00000065740 1845 ntBASIC18.66■□□□□ 0.58
Smim1P0C8K7 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Smim1P0C8K7 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Smim1P0C8K7 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Smim1P0C8K7 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Smim1P0C8K7 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Smim1P0C8K7 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Smim1P0C8K7 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Smim1P0C8K7 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Smim1P0C8K7 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Smim1P0C8K7 Gm6206-201ENSMUST00000133472 2199 ntBASIC18.57■□□□□ 0.56
Smim1P0C8K7 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Smim1P0C8K7 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Smim1P0C8K7 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Smim1P0C8K7 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Smim1P0C8K7 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC18.54■□□□□ 0.56
Smim1P0C8K7 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Smim1P0C8K7 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Smim1P0C8K7 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Smim1P0C8K7 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smim1P0C8K7 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Smim1P0C8K7 Gm6658-202ENSMUST00000209493 1885 ntBASIC18.49■□□□□ 0.55
Smim1P0C8K7 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Smim1P0C8K7 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Smim1P0C8K7 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Smim1P0C8K7 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Smim1P0C8K7 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Smim1P0C8K7 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Smim1P0C8K7 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Smim1P0C8K7 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC18.41■□□□□ 0.54
Smim1P0C8K7 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Smim1P0C8K7 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Smim1P0C8K7 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Smim1P0C8K7 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Smim1P0C8K7 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Smim1P0C8K7 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smim1P0C8K7 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
Smim1P0C8K7 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smim1P0C8K7 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smim1P0C8K7 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smim1P0C8K7 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC18.33■□□□□ 0.53
Smim1P0C8K7 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
Smim1P0C8K7 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Smim1P0C8K7 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Smim1P0C8K7 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
Smim1P0C8K7 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC18.31■□□□□ 0.52
Smim1P0C8K7 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Smim1P0C8K7 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Smim1P0C8K7 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Smim1P0C8K7 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Smim1P0C8K7 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Smim1P0C8K7 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Smim1P0C8K7 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Smim1P0C8K7 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Smim1P0C8K7 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Smim1P0C8K7 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Smim1P0C8K7 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Smim1P0C8K7 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Smim1P0C8K7 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Smim1P0C8K7 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Smim1P0C8K7 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Smim1P0C8K7 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Smim1P0C8K7 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Smim1P0C8K7 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Smim1P0C8K7 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Smim1P0C8K7 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC18.2■□□□□ 0.5
Smim1P0C8K7 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Smim1P0C8K7 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Smim1P0C8K7 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Smim1P0C8K7 Gm43445-201ENSMUST00000198564 2091 ntBASIC18.17■□□□□ 0.5
Smim1P0C8K7 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Smim1P0C8K7 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Smim1P0C8K7 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 16.4 ms