Protein–RNA interactions for Protein: A0A140T8P8

Trbv17, T cell receptor beta, variable 17 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv17A0A140T8P8 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC20.82■□□□□ 0.92
Trbv17A0A140T8P8 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trbv17A0A140T8P8 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Trbv17A0A140T8P8 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC20.8■□□□□ 0.92
Trbv17A0A140T8P8 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Trbv17A0A140T8P8 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Trbv17A0A140T8P8 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Trbv17A0A140T8P8 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Trbv17A0A140T8P8 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Trbv17A0A140T8P8 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC20.78■□□□□ 0.92
Trbv17A0A140T8P8 Gm25262-201ENSMUST00000174934 133 ntBASIC20.76■□□□□ 0.91
Trbv17A0A140T8P8 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
Trbv17A0A140T8P8 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trbv17A0A140T8P8 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trbv17A0A140T8P8 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trbv17A0A140T8P8 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC20.66■□□□□ 0.9
Trbv17A0A140T8P8 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC20.64■□□□□ 0.89
Trbv17A0A140T8P8 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trbv17A0A140T8P8 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trbv17A0A140T8P8 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Trbv17A0A140T8P8 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC20.59■□□□□ 0.89
Trbv17A0A140T8P8 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trbv17A0A140T8P8 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trbv17A0A140T8P8 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Trbv17A0A140T8P8 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Trbv17A0A140T8P8 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trbv17A0A140T8P8 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Trbv17A0A140T8P8 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Trbv17A0A140T8P8 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trbv17A0A140T8P8 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trbv17A0A140T8P8 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trbv17A0A140T8P8 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trbv17A0A140T8P8 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trbv17A0A140T8P8 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Trbv17A0A140T8P8 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trbv17A0A140T8P8 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trbv17A0A140T8P8 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trbv17A0A140T8P8 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trbv17A0A140T8P8 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Trbv17A0A140T8P8 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC20.37■□□□□ 0.85
Trbv17A0A140T8P8 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trbv17A0A140T8P8 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trbv17A0A140T8P8 Zfp131-207ENSMUST00000224946 1783 ntBASIC20.32■□□□□ 0.84
Trbv17A0A140T8P8 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC20.3■□□□□ 0.84
Trbv17A0A140T8P8 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC20.3■□□□□ 0.84
Trbv17A0A140T8P8 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trbv17A0A140T8P8 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Trbv17A0A140T8P8 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC20.28■□□□□ 0.84
Trbv17A0A140T8P8 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trbv17A0A140T8P8 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trbv17A0A140T8P8 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC20.23■□□□□ 0.83
Trbv17A0A140T8P8 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trbv17A0A140T8P8 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trbv17A0A140T8P8 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trbv17A0A140T8P8 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Trbv17A0A140T8P8 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Trbv17A0A140T8P8 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trbv17A0A140T8P8 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trbv17A0A140T8P8 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trbv17A0A140T8P8 Gm26115-201ENSMUST00000175605 87 ntBASIC20.12■□□□□ 0.81
Trbv17A0A140T8P8 AL845457.1-201ENSMUST00000197244 68 ntBASIC20.11■□□□□ 0.81
Trbv17A0A140T8P8 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trbv17A0A140T8P8 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Trbv17A0A140T8P8 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Trbv17A0A140T8P8 Gm27322-201ENSMUST00000184007 104 ntBASIC20.09■□□□□ 0.81
Trbv17A0A140T8P8 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
Trbv17A0A140T8P8 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trbv17A0A140T8P8 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Trbv17A0A140T8P8 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trbv17A0A140T8P8 Gm17082-201ENSMUST00000166043 1091 ntBASIC20.05■□□□□ 0.8
Trbv17A0A140T8P8 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trbv17A0A140T8P8 Gm8109-201ENSMUST00000194076 746 ntBASIC20.04■□□□□ 0.8
Trbv17A0A140T8P8 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trbv17A0A140T8P8 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Trbv17A0A140T8P8 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC20.02■□□□□ 0.8
Trbv17A0A140T8P8 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Trbv17A0A140T8P8 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Trbv17A0A140T8P8 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Trbv17A0A140T8P8 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC20■□□□□ 0.79
Trbv17A0A140T8P8 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trbv17A0A140T8P8 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trbv17A0A140T8P8 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Trbv17A0A140T8P8 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
Trbv17A0A140T8P8 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC19.96■□□□□ 0.79
Trbv17A0A140T8P8 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trbv17A0A140T8P8 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
Trbv17A0A140T8P8 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trbv17A0A140T8P8 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC19.89■□□□□ 0.78
Trbv17A0A140T8P8 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
Trbv17A0A140T8P8 Mipep-204ENSMUST00000225043 1548 ntBASIC19.88■□□□□ 0.77
Trbv17A0A140T8P8 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trbv17A0A140T8P8 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trbv17A0A140T8P8 AC166822.3-201ENSMUST00000227394 661 ntBASIC19.82■□□□□ 0.76
Trbv17A0A140T8P8 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trbv17A0A140T8P8 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Trbv17A0A140T8P8 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC19.81■□□□□ 0.76
Trbv17A0A140T8P8 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trbv17A0A140T8P8 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trbv17A0A140T8P8 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trbv17A0A140T8P8 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 10.8 ms