Protein–RNA interactions for Protein: A0A075B617

Trav16d-dv11, T cell receptor alpha variable 16D-DV11 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav16d-dv11A0A075B617 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trav16d-dv11A0A075B617 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Trav16d-dv11A0A075B617 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trav16d-dv11A0A075B617 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trav16d-dv11A0A075B617 AC153911.1-202ENSMUST00000218534 1034 ntBASIC19.92■□□□□ 0.78
Trav16d-dv11A0A075B617 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Trav16d-dv11A0A075B617 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
Trav16d-dv11A0A075B617 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Trav16d-dv11A0A075B617 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trav16d-dv11A0A075B617 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Trav16d-dv11A0A075B617 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Trav16d-dv11A0A075B617 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trav16d-dv11A0A075B617 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trav16d-dv11A0A075B617 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trav16d-dv11A0A075B617 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trav16d-dv11A0A075B617 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Trav16d-dv11A0A075B617 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trav16d-dv11A0A075B617 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trav16d-dv11A0A075B617 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Trav16d-dv11A0A075B617 Zxda-201ENSMUST00000117281 2621 ntBASIC19.67■□□□□ 0.74
Trav16d-dv11A0A075B617 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Trav16d-dv11A0A075B617 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trav16d-dv11A0A075B617 AC153504.1-201ENSMUST00000218379 2290 ntBASIC19.62■□□□□ 0.73
Trav16d-dv11A0A075B617 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Trav16d-dv11A0A075B617 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Trav16d-dv11A0A075B617 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trav16d-dv11A0A075B617 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC19.54■□□□□ 0.72
Trav16d-dv11A0A075B617 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trav16d-dv11A0A075B617 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Trav16d-dv11A0A075B617 Gm2415-204ENSMUST00000190235 2004 ntBASIC19.52■□□□□ 0.72
Trav16d-dv11A0A075B617 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
Trav16d-dv11A0A075B617 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trav16d-dv11A0A075B617 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC19.51■□□□□ 0.71
Trav16d-dv11A0A075B617 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trav16d-dv11A0A075B617 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC19.47■□□□□ 0.71
Trav16d-dv11A0A075B617 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC19.45■□□□□ 0.7
Trav16d-dv11A0A075B617 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trav16d-dv11A0A075B617 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trav16d-dv11A0A075B617 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trav16d-dv11A0A075B617 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Trav16d-dv11A0A075B617 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Trav16d-dv11A0A075B617 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trav16d-dv11A0A075B617 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Trav16d-dv11A0A075B617 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trav16d-dv11A0A075B617 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trav16d-dv11A0A075B617 Gm6658-202ENSMUST00000209493 1885 ntBASIC19.32■□□□□ 0.68
Trav16d-dv11A0A075B617 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trav16d-dv11A0A075B617 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trav16d-dv11A0A075B617 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trav16d-dv11A0A075B617 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Trav16d-dv11A0A075B617 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trav16d-dv11A0A075B617 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trav16d-dv11A0A075B617 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trav16d-dv11A0A075B617 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Trav16d-dv11A0A075B617 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trav16d-dv11A0A075B617 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Trav16d-dv11A0A075B617 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trav16d-dv11A0A075B617 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trav16d-dv11A0A075B617 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trav16d-dv11A0A075B617 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trav16d-dv11A0A075B617 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trav16d-dv11A0A075B617 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trav16d-dv11A0A075B617 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trav16d-dv11A0A075B617 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trav16d-dv11A0A075B617 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trav16d-dv11A0A075B617 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trav16d-dv11A0A075B617 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Trav16d-dv11A0A075B617 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Trav16d-dv11A0A075B617 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trav16d-dv11A0A075B617 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC19.16■□□□□ 0.66
Trav16d-dv11A0A075B617 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trav16d-dv11A0A075B617 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trav16d-dv11A0A075B617 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trav16d-dv11A0A075B617 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trav16d-dv11A0A075B617 Gm27325-201ENSMUST00000175467 74 ntBASIC19.13■□□□□ 0.65
Trav16d-dv11A0A075B617 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Trav16d-dv11A0A075B617 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trav16d-dv11A0A075B617 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Trav16d-dv11A0A075B617 Gm9905-201ENSMUST00000065740 1845 ntBASIC19.1■□□□□ 0.65
Trav16d-dv11A0A075B617 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav16d-dv11A0A075B617 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
Trav16d-dv11A0A075B617 Zfp131-207ENSMUST00000224946 1783 ntBASIC19.09■□□□□ 0.65
Trav16d-dv11A0A075B617 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trav16d-dv11A0A075B617 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trav16d-dv11A0A075B617 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC19.07■□□□□ 0.64
Trav16d-dv11A0A075B617 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trav16d-dv11A0A075B617 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trav16d-dv11A0A075B617 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trav16d-dv11A0A075B617 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Trav16d-dv11A0A075B617 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trav16d-dv11A0A075B617 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trav16d-dv11A0A075B617 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trav16d-dv11A0A075B617 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Trav16d-dv11A0A075B617 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trav16d-dv11A0A075B617 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Trav16d-dv11A0A075B617 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC19■□□□□ 0.63
Trav16d-dv11A0A075B617 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Trav16d-dv11A0A075B617 Gm6206-201ENSMUST00000133472 2199 ntBASIC18.98■□□□□ 0.63
Trav16d-dv11A0A075B617 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Trav16d-dv11A0A075B617 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 17 ms