Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Prpf40aQ9R1C7 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Prpf40aQ9R1C7 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC23.35■■□□□ 1.33
Prpf40aQ9R1C7 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC23.35■■□□□ 1.33
Prpf40aQ9R1C7 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Prpf40aQ9R1C7 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Prpf40aQ9R1C7 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Prpf40aQ9R1C7 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC23.34■■□□□ 1.33
Prpf40aQ9R1C7 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Prpf40aQ9R1C7 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC23.34■■□□□ 1.33
Prpf40aQ9R1C7 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
Prpf40aQ9R1C7 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Prpf40aQ9R1C7 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Prpf40aQ9R1C7 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Prpf40aQ9R1C7 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC23.34■■□□□ 1.33
Prpf40aQ9R1C7 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Prpf40aQ9R1C7 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
Prpf40aQ9R1C7 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Prpf40aQ9R1C7 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
Prpf40aQ9R1C7 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Prpf40aQ9R1C7 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Prpf40aQ9R1C7 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
Prpf40aQ9R1C7 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
Prpf40aQ9R1C7 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.32
Prpf40aQ9R1C7 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
Prpf40aQ9R1C7 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Prpf40aQ9R1C7 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC23.33■■□□□ 1.32
Prpf40aQ9R1C7 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
Prpf40aQ9R1C7 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Prpf40aQ9R1C7 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Prpf40aQ9R1C7 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Prpf40aQ9R1C7 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Prpf40aQ9R1C7 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC23.32■■□□□ 1.32
Prpf40aQ9R1C7 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Prpf40aQ9R1C7 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Prpf40aQ9R1C7 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Prpf40aQ9R1C7 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Prpf40aQ9R1C7 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC23.32■■□□□ 1.32
Prpf40aQ9R1C7 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
Prpf40aQ9R1C7 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC23.32■■□□□ 1.32
Prpf40aQ9R1C7 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Prpf40aQ9R1C7 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Prpf40aQ9R1C7 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Prpf40aQ9R1C7 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Prpf40aQ9R1C7 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Prpf40aQ9R1C7 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Prpf40aQ9R1C7 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC23.31■■□□□ 1.32
Prpf40aQ9R1C7 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC23.31■■□□□ 1.32
Prpf40aQ9R1C7 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Prpf40aQ9R1C7 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
Prpf40aQ9R1C7 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC23.3■■□□□ 1.32
Prpf40aQ9R1C7 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC23.3■■□□□ 1.32
Prpf40aQ9R1C7 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Prpf40aQ9R1C7 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC23.3■■□□□ 1.32
Prpf40aQ9R1C7 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Prpf40aQ9R1C7 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Prpf40aQ9R1C7 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Prpf40aQ9R1C7 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Prpf40aQ9R1C7 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Prpf40aQ9R1C7 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Prpf40aQ9R1C7 Gm5921-201ENSMUST00000075898 882 ntBASIC23.29■■□□□ 1.32
Prpf40aQ9R1C7 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Prpf40aQ9R1C7 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
Prpf40aQ9R1C7 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Prpf40aQ9R1C7 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Prpf40aQ9R1C7 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
Prpf40aQ9R1C7 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Prpf40aQ9R1C7 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
Prpf40aQ9R1C7 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
Prpf40aQ9R1C7 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Prpf40aQ9R1C7 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
Prpf40aQ9R1C7 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
Prpf40aQ9R1C7 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Prpf40aQ9R1C7 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
Prpf40aQ9R1C7 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC23.27■■□□□ 1.32
Prpf40aQ9R1C7 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC23.27■■□□□ 1.32
Prpf40aQ9R1C7 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC23.27■■□□□ 1.32
Prpf40aQ9R1C7 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Prpf40aQ9R1C7 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Prpf40aQ9R1C7 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Prpf40aQ9R1C7 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
Prpf40aQ9R1C7 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Prpf40aQ9R1C7 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
Prpf40aQ9R1C7 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
Prpf40aQ9R1C7 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Prpf40aQ9R1C7 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Prpf40aQ9R1C7 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC23.25■■□□□ 1.31
Prpf40aQ9R1C7 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Prpf40aQ9R1C7 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC23.25■■□□□ 1.31
Prpf40aQ9R1C7 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
Prpf40aQ9R1C7 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Prpf40aQ9R1C7 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
Prpf40aQ9R1C7 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
Prpf40aQ9R1C7 Nsd1-203ENSMUST00000224156 1149 ntBASIC23.24■■□□□ 1.31
Prpf40aQ9R1C7 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Prpf40aQ9R1C7 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC23.24■■□□□ 1.31
Prpf40aQ9R1C7 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Prpf40aQ9R1C7 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Prpf40aQ9R1C7 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Prpf40aQ9R1C7 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Retrieved 100 of 76,532 protein–RNA pairs in 39.6 ms