Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Vps28Q9D1C8 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Vps28Q9D1C8 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Vps28Q9D1C8 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC21.82■■□□□ 1.08
Vps28Q9D1C8 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Vps28Q9D1C8 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC21.82■■□□□ 1.08
Vps28Q9D1C8 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC21.82■■□□□ 1.08
Vps28Q9D1C8 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Vps28Q9D1C8 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Vps28Q9D1C8 Gm10232-201ENSMUST00000089221 720 ntBASIC21.81■■□□□ 1.08
Vps28Q9D1C8 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Vps28Q9D1C8 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Vps28Q9D1C8 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Vps28Q9D1C8 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Vps28Q9D1C8 Gm28536-201ENSMUST00000190971 1317 ntBASIC21.8■■□□□ 1.08
Vps28Q9D1C8 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Vps28Q9D1C8 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Vps28Q9D1C8 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Vps28Q9D1C8 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Vps28Q9D1C8 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Vps28Q9D1C8 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Vps28Q9D1C8 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC21.8■■□□□ 1.08
Vps28Q9D1C8 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
Vps28Q9D1C8 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Vps28Q9D1C8 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
Vps28Q9D1C8 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
Vps28Q9D1C8 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
Vps28Q9D1C8 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC21.79■■□□□ 1.08
Vps28Q9D1C8 Gm13042-201ENSMUST00000119244 1955 ntBASIC21.79■■□□□ 1.08
Vps28Q9D1C8 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Vps28Q9D1C8 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
Vps28Q9D1C8 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Vps28Q9D1C8 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC21.78■■□□□ 1.08
Vps28Q9D1C8 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Vps28Q9D1C8 Gm18755-201ENSMUST00000218030 1099 ntBASIC21.78■■□□□ 1.08
Vps28Q9D1C8 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Vps28Q9D1C8 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Vps28Q9D1C8 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Vps28Q9D1C8 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Vps28Q9D1C8 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
Vps28Q9D1C8 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Vps28Q9D1C8 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Vps28Q9D1C8 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Vps28Q9D1C8 Gm16464-201ENSMUST00000117815 1095 ntBASIC21.77■■□□□ 1.08
Vps28Q9D1C8 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Vps28Q9D1C8 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC21.77■■□□□ 1.08
Vps28Q9D1C8 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
Vps28Q9D1C8 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.07
Vps28Q9D1C8 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC21.76■■□□□ 1.07
Vps28Q9D1C8 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Vps28Q9D1C8 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Vps28Q9D1C8 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Vps28Q9D1C8 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Vps28Q9D1C8 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Vps28Q9D1C8 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC21.76■■□□□ 1.07
Vps28Q9D1C8 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC21.76■■□□□ 1.07
Vps28Q9D1C8 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
Vps28Q9D1C8 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Vps28Q9D1C8 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
Vps28Q9D1C8 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Vps28Q9D1C8 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Vps28Q9D1C8 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Vps28Q9D1C8 Gm42501-201ENSMUST00000200220 1026 ntBASIC21.75■■□□□ 1.07
Vps28Q9D1C8 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC21.75■■□□□ 1.07
Vps28Q9D1C8 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Vps28Q9D1C8 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Vps28Q9D1C8 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Vps28Q9D1C8 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Vps28Q9D1C8 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Vps28Q9D1C8 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Vps28Q9D1C8 AC093043.1-201ENSMUST00000226700 898 ntBASIC21.74■■□□□ 1.07
Vps28Q9D1C8 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
Vps28Q9D1C8 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC21.74■■□□□ 1.07
Vps28Q9D1C8 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Vps28Q9D1C8 Gm11847-201ENSMUST00000125165 1119 ntBASIC21.73■■□□□ 1.07
Vps28Q9D1C8 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC21.73■■□□□ 1.07
Vps28Q9D1C8 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Vps28Q9D1C8 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Vps28Q9D1C8 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Vps28Q9D1C8 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
Vps28Q9D1C8 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Vps28Q9D1C8 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Vps28Q9D1C8 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Vps28Q9D1C8 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC21.72■■□□□ 1.07
Vps28Q9D1C8 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Vps28Q9D1C8 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Vps28Q9D1C8 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Vps28Q9D1C8 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Vps28Q9D1C8 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Vps28Q9D1C8 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
Vps28Q9D1C8 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
Vps28Q9D1C8 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
Vps28Q9D1C8 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Vps28Q9D1C8 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Vps28Q9D1C8 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Vps28Q9D1C8 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
Vps28Q9D1C8 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Vps28Q9D1C8 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vps28Q9D1C8 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vps28Q9D1C8 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 51 ms