Protein–RNA interactions for Protein: Q8K2I2

Cchcr1, Coiled-coil alpha-helical rod protein 1, mousemouse

Predictions only

Length 770 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cchcr1Q8K2I2 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Cchcr1Q8K2I2 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
Cchcr1Q8K2I2 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
Cchcr1Q8K2I2 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC25.21■■□□□ 1.63
Cchcr1Q8K2I2 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC25.21■■□□□ 1.63
Cchcr1Q8K2I2 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
Cchcr1Q8K2I2 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Cchcr1Q8K2I2 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Cchcr1Q8K2I2 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC25.21■■□□□ 1.63
Cchcr1Q8K2I2 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Cchcr1Q8K2I2 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.63
Cchcr1Q8K2I2 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC25.2■■□□□ 1.62
Cchcr1Q8K2I2 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC25.2■■□□□ 1.62
Cchcr1Q8K2I2 Gm5987-201ENSMUST00000196433 1151 ntBASIC25.2■■□□□ 1.62
Cchcr1Q8K2I2 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
Cchcr1Q8K2I2 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Cchcr1Q8K2I2 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC25.19■■□□□ 1.62
Cchcr1Q8K2I2 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC25.19■■□□□ 1.62
Cchcr1Q8K2I2 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC25.19■■□□□ 1.62
Cchcr1Q8K2I2 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
Cchcr1Q8K2I2 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC25.19■■□□□ 1.62
Cchcr1Q8K2I2 Gm20634-201ENSMUST00000090779 2956 ntBASIC25.19■■□□□ 1.62
Cchcr1Q8K2I2 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
Cchcr1Q8K2I2 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC25.18■■□□□ 1.62
Cchcr1Q8K2I2 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
Cchcr1Q8K2I2 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
Cchcr1Q8K2I2 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC25.18■■□□□ 1.62
Cchcr1Q8K2I2 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC25.17■■□□□ 1.62
Cchcr1Q8K2I2 Gm7332-201ENSMUST00000118351 454 ntBASIC25.17■■□□□ 1.62
Cchcr1Q8K2I2 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC25.17■■□□□ 1.62
Cchcr1Q8K2I2 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
Cchcr1Q8K2I2 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Cchcr1Q8K2I2 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Cchcr1Q8K2I2 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC25.15■■□□□ 1.62
Cchcr1Q8K2I2 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Cchcr1Q8K2I2 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Cchcr1Q8K2I2 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Cchcr1Q8K2I2 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Cchcr1Q8K2I2 Nsd1-206ENSMUST00000224918 1001 ntBASIC25.14■■□□□ 1.62
Cchcr1Q8K2I2 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.61
Cchcr1Q8K2I2 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC25.14■■□□□ 1.61
Cchcr1Q8K2I2 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
Cchcr1Q8K2I2 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC25.13■■□□□ 1.61
Cchcr1Q8K2I2 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Cchcr1Q8K2I2 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC25.13■■□□□ 1.61
Cchcr1Q8K2I2 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Cchcr1Q8K2I2 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Cchcr1Q8K2I2 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC25.13■■□□□ 1.61
Cchcr1Q8K2I2 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
Cchcr1Q8K2I2 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC25.12■■□□□ 1.61
Cchcr1Q8K2I2 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC25.12■■□□□ 1.61
Cchcr1Q8K2I2 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC25.12■■□□□ 1.61
Cchcr1Q8K2I2 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
Cchcr1Q8K2I2 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Cchcr1Q8K2I2 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Cchcr1Q8K2I2 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Cchcr1Q8K2I2 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
Cchcr1Q8K2I2 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Cchcr1Q8K2I2 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC25.11■■□□□ 1.61
Cchcr1Q8K2I2 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Cchcr1Q8K2I2 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Cchcr1Q8K2I2 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC25.1■■□□□ 1.61
Cchcr1Q8K2I2 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
Cchcr1Q8K2I2 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Cchcr1Q8K2I2 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Cchcr1Q8K2I2 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC25.09■■□□□ 1.61
Cchcr1Q8K2I2 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC25.09■■□□□ 1.61
Cchcr1Q8K2I2 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Cchcr1Q8K2I2 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Cchcr1Q8K2I2 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Cchcr1Q8K2I2 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC25.08■■□□□ 1.61
Cchcr1Q8K2I2 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
Cchcr1Q8K2I2 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Cchcr1Q8K2I2 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
Cchcr1Q8K2I2 Mir6538-201ENSMUST00000183713 110 ntBASIC25.08■■□□□ 1.61
Cchcr1Q8K2I2 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
Cchcr1Q8K2I2 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC25.08■■□□□ 1.61
Cchcr1Q8K2I2 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC25.08■■□□□ 1.61
Cchcr1Q8K2I2 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Cchcr1Q8K2I2 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC25.07■■□□□ 1.6
Cchcr1Q8K2I2 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Cchcr1Q8K2I2 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
Cchcr1Q8K2I2 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC25.07■■□□□ 1.6
Cchcr1Q8K2I2 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Cchcr1Q8K2I2 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC25.07■■□□□ 1.6
Cchcr1Q8K2I2 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
Cchcr1Q8K2I2 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Cchcr1Q8K2I2 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Cchcr1Q8K2I2 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Cchcr1Q8K2I2 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Cchcr1Q8K2I2 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Cchcr1Q8K2I2 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Cchcr1Q8K2I2 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Cchcr1Q8K2I2 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Cchcr1Q8K2I2 Gm43592-201ENSMUST00000196922 1165 ntBASIC25.05■■□□□ 1.6
Cchcr1Q8K2I2 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC25.05■■□□□ 1.6
Cchcr1Q8K2I2 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Cchcr1Q8K2I2 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Cchcr1Q8K2I2 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC25.04■■□□□ 1.6
Cchcr1Q8K2I2 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
Retrieved 100 of 76,532 protein–RNA pairs in 41.3 ms