Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC30.56■■■□□ 2.48
Usp47Q8BY87 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
Usp47Q8BY87 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC30.55■■■□□ 2.48
Usp47Q8BY87 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC30.55■■■□□ 2.48
Usp47Q8BY87 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC30.55■■■□□ 2.48
Usp47Q8BY87 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Usp47Q8BY87 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Usp47Q8BY87 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
Usp47Q8BY87 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Usp47Q8BY87 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Usp47Q8BY87 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC30.54■■■□□ 2.48
Usp47Q8BY87 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC30.54■■■□□ 2.48
Usp47Q8BY87 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
Usp47Q8BY87 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Usp47Q8BY87 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC30.53■■■□□ 2.48
Usp47Q8BY87 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Usp47Q8BY87 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
Usp47Q8BY87 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC30.52■■■□□ 2.48
Usp47Q8BY87 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC30.52■■■□□ 2.48
Usp47Q8BY87 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC30.52■■■□□ 2.48
Usp47Q8BY87 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Usp47Q8BY87 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
Usp47Q8BY87 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
Usp47Q8BY87 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
Usp47Q8BY87 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.47
Usp47Q8BY87 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
Usp47Q8BY87 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC30.5■■■□□ 2.47
Usp47Q8BY87 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
Usp47Q8BY87 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
Usp47Q8BY87 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
Usp47Q8BY87 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC30.49■■■□□ 2.47
Usp47Q8BY87 AC158990.1-201ENSMUST00000221450 2016 ntBASIC30.48■■■□□ 2.47
Usp47Q8BY87 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC30.48■■■□□ 2.47
Usp47Q8BY87 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC30.48■■■□□ 2.47
Usp47Q8BY87 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Usp47Q8BY87 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC30.47■■■□□ 2.47
Usp47Q8BY87 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC30.47■■■□□ 2.47
Usp47Q8BY87 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC30.47■■■□□ 2.47
Usp47Q8BY87 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
Usp47Q8BY87 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC30.46■■■□□ 2.47
Usp47Q8BY87 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC30.46■■■□□ 2.47
Usp47Q8BY87 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Usp47Q8BY87 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Usp47Q8BY87 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC30.45■■■□□ 2.47
Usp47Q8BY87 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC30.45■■■□□ 2.47
Usp47Q8BY87 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC30.45■■■□□ 2.47
Usp47Q8BY87 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
Usp47Q8BY87 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
Usp47Q8BY87 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Usp47Q8BY87 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Usp47Q8BY87 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Usp47Q8BY87 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Usp47Q8BY87 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC30.43■■■□□ 2.46
Usp47Q8BY87 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC30.43■■■□□ 2.46
Usp47Q8BY87 Gm40881-201ENSMUST00000223397 166 ntBASIC30.43■■■□□ 2.46
Usp47Q8BY87 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC30.43■■■□□ 2.46
Usp47Q8BY87 AC153962.1-201ENSMUST00000218530 1948 ntBASIC30.43■■■□□ 2.46
Usp47Q8BY87 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC30.42■■■□□ 2.46
Usp47Q8BY87 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC30.42■■■□□ 2.46
Usp47Q8BY87 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
Usp47Q8BY87 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC30.42■■■□□ 2.46
Usp47Q8BY87 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC30.42■■■□□ 2.46
Usp47Q8BY87 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC30.42■■■□□ 2.46
Usp47Q8BY87 Etf1-202ENSMUST00000180351 108 ntBASIC30.41■■■□□ 2.46
Usp47Q8BY87 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC30.41■■■□□ 2.46
Usp47Q8BY87 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
Usp47Q8BY87 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
Usp47Q8BY87 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
Usp47Q8BY87 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC30.41■■■□□ 2.46
Usp47Q8BY87 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
Usp47Q8BY87 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
Usp47Q8BY87 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Usp47Q8BY87 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Usp47Q8BY87 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC30.4■■■□□ 2.46
Usp47Q8BY87 Gm10399-202ENSMUST00000202768 748 ntBASIC30.4■■■□□ 2.46
Usp47Q8BY87 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Usp47Q8BY87 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC30.39■■■□□ 2.46
Usp47Q8BY87 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC30.39■■■□□ 2.46
Usp47Q8BY87 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
Usp47Q8BY87 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.45
Usp47Q8BY87 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Usp47Q8BY87 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC30.38■■■□□ 2.45
Usp47Q8BY87 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Usp47Q8BY87 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
Usp47Q8BY87 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC30.38■■■□□ 2.45
Usp47Q8BY87 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Usp47Q8BY87 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC30.37■■■□□ 2.45
Usp47Q8BY87 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Usp47Q8BY87 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
Usp47Q8BY87 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Usp47Q8BY87 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC30.37■■■□□ 2.45
Usp47Q8BY87 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Usp47Q8BY87 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC30.37■■■□□ 2.45
Usp47Q8BY87 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC30.37■■■□□ 2.45
Usp47Q8BY87 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC30.36■■■□□ 2.45
Usp47Q8BY87 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC30.36■■■□□ 2.45
Usp47Q8BY87 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
Usp47Q8BY87 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC30.36■■■□□ 2.45
Usp47Q8BY87 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
Usp47Q8BY87 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
Retrieved 100 of 76,532 protein–RNA pairs in 81.3 ms