Protein–RNA interactions for Protein: Q5R1I1

Trav7d-3, T cell receptor alpha variable 7-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav7d-3Q5R1I1 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav7d-3Q5R1I1 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC15.57■□□□□ 0.08
Trav7d-3Q5R1I1 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav7d-3Q5R1I1 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav7d-3Q5R1I1 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav7d-3Q5R1I1 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav7d-3Q5R1I1 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Trav7d-3Q5R1I1 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trav7d-3Q5R1I1 Gm13042-201ENSMUST00000119244 1955 ntBASIC15.56■□□□□ 0.08
Trav7d-3Q5R1I1 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav7d-3Q5R1I1 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav7d-3Q5R1I1 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav7d-3Q5R1I1 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC15.56■□□□□ 0.08
Trav7d-3Q5R1I1 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Trav7d-3Q5R1I1 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC15.56■□□□□ 0.08
Trav7d-3Q5R1I1 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Trav7d-3Q5R1I1 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Trav7d-3Q5R1I1 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trav7d-3Q5R1I1 Gm38160-201ENSMUST00000193090 2499 ntBASIC15.56■□□□□ 0.08
Trav7d-3Q5R1I1 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav7d-3Q5R1I1 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav7d-3Q5R1I1 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav7d-3Q5R1I1 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav7d-3Q5R1I1 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav7d-3Q5R1I1 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Trav7d-3Q5R1I1 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Trav7d-3Q5R1I1 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Trav7d-3Q5R1I1 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav7d-3Q5R1I1 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav7d-3Q5R1I1 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trav7d-3Q5R1I1 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Trav7d-3Q5R1I1 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Trav7d-3Q5R1I1 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC15.54■□□□□ 0.08
Trav7d-3Q5R1I1 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav7d-3Q5R1I1 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC15.54■□□□□ 0.08
Trav7d-3Q5R1I1 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC15.54■□□□□ 0.08
Trav7d-3Q5R1I1 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav7d-3Q5R1I1 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav7d-3Q5R1I1 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Trav7d-3Q5R1I1 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Trav7d-3Q5R1I1 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Trav7d-3Q5R1I1 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trav7d-3Q5R1I1 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC15.54■□□□□ 0.08
Trav7d-3Q5R1I1 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Trav7d-3Q5R1I1 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
Trav7d-3Q5R1I1 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav7d-3Q5R1I1 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC15.53■□□□□ 0.08
Trav7d-3Q5R1I1 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC15.53■□□□□ 0.08
Trav7d-3Q5R1I1 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav7d-3Q5R1I1 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav7d-3Q5R1I1 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav7d-3Q5R1I1 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav7d-3Q5R1I1 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav7d-3Q5R1I1 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Trav7d-3Q5R1I1 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav7d-3Q5R1I1 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav7d-3Q5R1I1 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC15.52■□□□□ 0.08
Trav7d-3Q5R1I1 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trav7d-3Q5R1I1 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trav7d-3Q5R1I1 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trav7d-3Q5R1I1 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trav7d-3Q5R1I1 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trav7d-3Q5R1I1 AC115037.1-201ENSMUST00000223391 2173 ntBASIC15.52■□□□□ 0.07
Trav7d-3Q5R1I1 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
Trav7d-3Q5R1I1 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav7d-3Q5R1I1 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav7d-3Q5R1I1 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav7d-3Q5R1I1 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Trav7d-3Q5R1I1 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC15.51■□□□□ 0.07
Trav7d-3Q5R1I1 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav7d-3Q5R1I1 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav7d-3Q5R1I1 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Trav7d-3Q5R1I1 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC15.51■□□□□ 0.07
Trav7d-3Q5R1I1 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Trav7d-3Q5R1I1 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Trav7d-3Q5R1I1 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav7d-3Q5R1I1 AC153962.1-201ENSMUST00000218530 1948 ntBASIC15.51■□□□□ 0.07
Trav7d-3Q5R1I1 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Trav7d-3Q5R1I1 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav7d-3Q5R1I1 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav7d-3Q5R1I1 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav7d-3Q5R1I1 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trav7d-3Q5R1I1 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav7d-3Q5R1I1 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trav7d-3Q5R1I1 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trav7d-3Q5R1I1 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Trav7d-3Q5R1I1 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav7d-3Q5R1I1 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav7d-3Q5R1I1 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav7d-3Q5R1I1 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trav7d-3Q5R1I1 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Trav7d-3Q5R1I1 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav7d-3Q5R1I1 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav7d-3Q5R1I1 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC15.49■□□□□ 0.07
Trav7d-3Q5R1I1 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC15.49■□□□□ 0.07
Trav7d-3Q5R1I1 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
Trav7d-3Q5R1I1 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC15.49■□□□□ 0.07
Trav7d-3Q5R1I1 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav7d-3Q5R1I1 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav7d-3Q5R1I1 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 17.4 ms