Protein–RNA interactions for Protein: Q38HM4

Trim63, E3 ubiquitin-protein ligase TRIM63, mousemouse

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim63Q38HM4 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim63Q38HM4 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim63Q38HM4 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim63Q38HM4 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim63Q38HM4 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim63Q38HM4 Particl-201ENSMUST00000205370 1560 ntBASIC17.68■□□□□ 0.42
Trim63Q38HM4 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim63Q38HM4 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
Trim63Q38HM4 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim63Q38HM4 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Trim63Q38HM4 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trim63Q38HM4 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim63Q38HM4 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim63Q38HM4 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC17.67■□□□□ 0.42
Trim63Q38HM4 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim63Q38HM4 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim63Q38HM4 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC17.67■□□□□ 0.42
Trim63Q38HM4 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim63Q38HM4 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trim63Q38HM4 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim63Q38HM4 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim63Q38HM4 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Trim63Q38HM4 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trim63Q38HM4 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim63Q38HM4 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim63Q38HM4 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
Trim63Q38HM4 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
Trim63Q38HM4 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim63Q38HM4 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim63Q38HM4 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim63Q38HM4 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim63Q38HM4 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trim63Q38HM4 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC17.66■□□□□ 0.42
Trim63Q38HM4 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim63Q38HM4 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim63Q38HM4 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim63Q38HM4 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim63Q38HM4 Gm25262-201ENSMUST00000174934 133 ntBASIC17.65■□□□□ 0.42
Trim63Q38HM4 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim63Q38HM4 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim63Q38HM4 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim63Q38HM4 Gm5112-201ENSMUST00000204407 2368 ntBASIC17.65■□□□□ 0.42
Trim63Q38HM4 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Trim63Q38HM4 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Trim63Q38HM4 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim63Q38HM4 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.41
Trim63Q38HM4 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim63Q38HM4 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim63Q38HM4 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim63Q38HM4 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim63Q38HM4 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim63Q38HM4 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trim63Q38HM4 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim63Q38HM4 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim63Q38HM4 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC17.63■□□□□ 0.41
Trim63Q38HM4 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim63Q38HM4 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC17.63■□□□□ 0.41
Trim63Q38HM4 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trim63Q38HM4 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim63Q38HM4 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC17.62■□□□□ 0.41
Trim63Q38HM4 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trim63Q38HM4 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim63Q38HM4 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim63Q38HM4 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim63Q38HM4 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
Trim63Q38HM4 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim63Q38HM4 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim63Q38HM4 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim63Q38HM4 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim63Q38HM4 Gm34220-201ENSMUST00000223001 2709 ntBASIC17.61■□□□□ 0.41
Trim63Q38HM4 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim63Q38HM4 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim63Q38HM4 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim63Q38HM4 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Trim63Q38HM4 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim63Q38HM4 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim63Q38HM4 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC17.6■□□□□ 0.41
Trim63Q38HM4 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim63Q38HM4 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim63Q38HM4 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim63Q38HM4 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim63Q38HM4 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim63Q38HM4 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim63Q38HM4 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim63Q38HM4 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim63Q38HM4 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim63Q38HM4 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim63Q38HM4 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trim63Q38HM4 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim63Q38HM4 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim63Q38HM4 AC166822.3-201ENSMUST00000227394 661 ntBASIC17.59■□□□□ 0.41
Trim63Q38HM4 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim63Q38HM4 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim63Q38HM4 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim63Q38HM4 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
Trim63Q38HM4 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Trim63Q38HM4 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim63Q38HM4 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim63Q38HM4 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trim63Q38HM4 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 42.4 ms