Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC20.5■□□□□ 0.87
Cdx2P43241 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cdx2P43241 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cdx2P43241 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cdx2P43241 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cdx2P43241 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cdx2P43241 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Cdx2P43241 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cdx2P43241 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC20.49■□□□□ 0.87
Cdx2P43241 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cdx2P43241 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Cdx2P43241 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC20.48■□□□□ 0.87
Cdx2P43241 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Cdx2P43241 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Cdx2P43241 Gm6934-201ENSMUST00000194780 1905 ntBASIC20.47■□□□□ 0.87
Cdx2P43241 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Cdx2P43241 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC20.47■□□□□ 0.87
Cdx2P43241 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Cdx2P43241 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Cdx2P43241 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Cdx2P43241 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cdx2P43241 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cdx2P43241 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Cdx2P43241 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Cdx2P43241 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Cdx2P43241 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Cdx2P43241 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cdx2P43241 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cdx2P43241 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cdx2P43241 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC20.45■□□□□ 0.87
Cdx2P43241 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Cdx2P43241 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC20.45■□□□□ 0.86
Cdx2P43241 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Cdx2P43241 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cdx2P43241 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Cdx2P43241 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Cdx2P43241 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cdx2P43241 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC20.45■□□□□ 0.86
Cdx2P43241 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cdx2P43241 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cdx2P43241 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC20.45■□□□□ 0.86
Cdx2P43241 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cdx2P43241 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC20.44■□□□□ 0.86
Cdx2P43241 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cdx2P43241 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Cdx2P43241 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC20.44■□□□□ 0.86
Cdx2P43241 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cdx2P43241 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cdx2P43241 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Cdx2P43241 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC20.43■□□□□ 0.86
Cdx2P43241 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Cdx2P43241 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC20.43■□□□□ 0.86
Cdx2P43241 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cdx2P43241 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cdx2P43241 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
Cdx2P43241 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Cdx2P43241 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Cdx2P43241 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cdx2P43241 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
Cdx2P43241 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cdx2P43241 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cdx2P43241 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC20.41■□□□□ 0.86
Cdx2P43241 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Cdx2P43241 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Cdx2P43241 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Cdx2P43241 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cdx2P43241 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Cdx2P43241 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Cdx2P43241 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cdx2P43241 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cdx2P43241 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC20.4■□□□□ 0.86
Cdx2P43241 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cdx2P43241 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Cdx2P43241 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cdx2P43241 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cdx2P43241 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Cdx2P43241 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC20.39■□□□□ 0.85
Cdx2P43241 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC20.39■□□□□ 0.85
Cdx2P43241 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Cdx2P43241 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
Cdx2P43241 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Cdx2P43241 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Cdx2P43241 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Cdx2P43241 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Cdx2P43241 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC20.37■□□□□ 0.85
Cdx2P43241 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC20.37■□□□□ 0.85
Cdx2P43241 Gm9207-201ENSMUST00000198773 1115 ntBASIC20.37■□□□□ 0.85
Cdx2P43241 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Cdx2P43241 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Cdx2P43241 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Cdx2P43241 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Cdx2P43241 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Cdx2P43241 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cdx2P43241 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Cdx2P43241 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC20.36■□□□□ 0.85
Cdx2P43241 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cdx2P43241 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cdx2P43241 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cdx2P43241 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cdx2P43241 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 34.5 ms