Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Prpf40aQ9R1C7 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC23.52■■□□□ 1.36
Prpf40aQ9R1C7 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
Prpf40aQ9R1C7 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
Prpf40aQ9R1C7 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
Prpf40aQ9R1C7 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC23.51■■□□□ 1.35
Prpf40aQ9R1C7 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC23.51■■□□□ 1.35
Prpf40aQ9R1C7 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC23.51■■□□□ 1.35
Prpf40aQ9R1C7 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Prpf40aQ9R1C7 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC23.51■■□□□ 1.35
Prpf40aQ9R1C7 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Prpf40aQ9R1C7 AC117245.4-201ENSMUST00000217388 1646 ntBASIC23.51■■□□□ 1.35
Prpf40aQ9R1C7 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
Prpf40aQ9R1C7 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
Prpf40aQ9R1C7 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC23.5■■□□□ 1.35
Prpf40aQ9R1C7 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Prpf40aQ9R1C7 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Prpf40aQ9R1C7 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC23.5■■□□□ 1.35
Prpf40aQ9R1C7 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC23.5■■□□□ 1.35
Prpf40aQ9R1C7 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Prpf40aQ9R1C7 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Prpf40aQ9R1C7 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Prpf40aQ9R1C7 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC23.5■■□□□ 1.35
Prpf40aQ9R1C7 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Prpf40aQ9R1C7 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Prpf40aQ9R1C7 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC23.49■■□□□ 1.35
Prpf40aQ9R1C7 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Prpf40aQ9R1C7 Dmtn-209ENSMUST00000228295 2572 ntBASIC23.49■■□□□ 1.35
Prpf40aQ9R1C7 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Prpf40aQ9R1C7 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Prpf40aQ9R1C7 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC23.48■■□□□ 1.35
Prpf40aQ9R1C7 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
Prpf40aQ9R1C7 AC124392.1-201ENSMUST00000225172 5324 ntBASIC23.48■■□□□ 1.35
Prpf40aQ9R1C7 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC23.47■■□□□ 1.35
Prpf40aQ9R1C7 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC23.47■■□□□ 1.35
Prpf40aQ9R1C7 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
Prpf40aQ9R1C7 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC23.47■■□□□ 1.35
Prpf40aQ9R1C7 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
Prpf40aQ9R1C7 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Prpf40aQ9R1C7 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC23.46■■□□□ 1.35
Prpf40aQ9R1C7 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC23.46■■□□□ 1.35
Prpf40aQ9R1C7 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Prpf40aQ9R1C7 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC23.46■■□□□ 1.35
Prpf40aQ9R1C7 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC23.45■■□□□ 1.34
Prpf40aQ9R1C7 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC23.45■■□□□ 1.34
Prpf40aQ9R1C7 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Prpf40aQ9R1C7 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC23.45■■□□□ 1.34
Prpf40aQ9R1C7 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Prpf40aQ9R1C7 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Prpf40aQ9R1C7 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Prpf40aQ9R1C7 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Prpf40aQ9R1C7 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC23.44■■□□□ 1.34
Prpf40aQ9R1C7 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Prpf40aQ9R1C7 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Prpf40aQ9R1C7 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Prpf40aQ9R1C7 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Prpf40aQ9R1C7 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Prpf40aQ9R1C7 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC23.42■■□□□ 1.34
Prpf40aQ9R1C7 AC153962.1-201ENSMUST00000218530 1948 ntBASIC23.42■■□□□ 1.34
Prpf40aQ9R1C7 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Prpf40aQ9R1C7 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Prpf40aQ9R1C7 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
Prpf40aQ9R1C7 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC23.42■■□□□ 1.34
Prpf40aQ9R1C7 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC23.41■■□□□ 1.34
Prpf40aQ9R1C7 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Prpf40aQ9R1C7 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC23.41■■□□□ 1.34
Prpf40aQ9R1C7 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC23.41■■□□□ 1.34
Prpf40aQ9R1C7 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC23.41■■□□□ 1.34
Prpf40aQ9R1C7 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Prpf40aQ9R1C7 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Prpf40aQ9R1C7 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Prpf40aQ9R1C7 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC23.41■■□□□ 1.34
Prpf40aQ9R1C7 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Prpf40aQ9R1C7 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
Prpf40aQ9R1C7 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC23.4■■□□□ 1.34
Prpf40aQ9R1C7 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC23.4■■□□□ 1.34
Prpf40aQ9R1C7 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
Prpf40aQ9R1C7 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Prpf40aQ9R1C7 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Prpf40aQ9R1C7 AC115037.1-201ENSMUST00000223391 2173 ntBASIC23.4■■□□□ 1.34
Prpf40aQ9R1C7 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC23.39■■□□□ 1.34
Prpf40aQ9R1C7 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC23.39■■□□□ 1.33
Prpf40aQ9R1C7 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Prpf40aQ9R1C7 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
Prpf40aQ9R1C7 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
Prpf40aQ9R1C7 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Prpf40aQ9R1C7 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
Prpf40aQ9R1C7 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Prpf40aQ9R1C7 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC23.38■■□□□ 1.33
Prpf40aQ9R1C7 Gm13042-201ENSMUST00000119244 1955 ntBASIC23.38■■□□□ 1.33
Prpf40aQ9R1C7 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
Prpf40aQ9R1C7 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Prpf40aQ9R1C7 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Prpf40aQ9R1C7 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
Prpf40aQ9R1C7 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Prpf40aQ9R1C7 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
Prpf40aQ9R1C7 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Prpf40aQ9R1C7 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC23.36■■□□□ 1.33
Prpf40aQ9R1C7 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Prpf40aQ9R1C7 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
Retrieved 100 of 76,532 protein–RNA pairs in 127.3 ms