Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
Scn4aQ9ER60 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
Scn4aQ9ER60 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
Scn4aQ9ER60 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
Scn4aQ9ER60 Gm27405-201ENSMUST00000184201 112 ntBASIC30.84■■■□□ 2.53
Scn4aQ9ER60 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
Scn4aQ9ER60 Gm43137-201ENSMUST00000198052 594 ntBASIC30.84■■■□□ 2.53
Scn4aQ9ER60 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
Scn4aQ9ER60 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC30.82■■■□□ 2.52
Scn4aQ9ER60 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
Scn4aQ9ER60 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
Scn4aQ9ER60 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC30.82■■■□□ 2.52
Scn4aQ9ER60 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC30.82■■■□□ 2.52
Scn4aQ9ER60 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
Scn4aQ9ER60 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
Scn4aQ9ER60 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC30.82■■■□□ 2.52
Scn4aQ9ER60 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC30.82■■■□□ 2.52
Scn4aQ9ER60 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC30.81■■■□□ 2.52
Scn4aQ9ER60 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
Scn4aQ9ER60 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC30.81■■■□□ 2.52
Scn4aQ9ER60 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
Scn4aQ9ER60 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC30.8■■■□□ 2.52
Scn4aQ9ER60 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
Scn4aQ9ER60 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC30.8■■■□□ 2.52
Scn4aQ9ER60 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
Scn4aQ9ER60 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
Scn4aQ9ER60 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
Scn4aQ9ER60 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC30.8■■■□□ 2.52
Scn4aQ9ER60 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
Scn4aQ9ER60 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
Scn4aQ9ER60 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC30.79■■■□□ 2.52
Scn4aQ9ER60 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
Scn4aQ9ER60 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
Scn4aQ9ER60 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC30.78■■■□□ 2.52
Scn4aQ9ER60 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
Scn4aQ9ER60 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC30.77■■■□□ 2.52
Scn4aQ9ER60 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC30.77■■■□□ 2.52
Scn4aQ9ER60 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC30.77■■■□□ 2.52
Scn4aQ9ER60 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
Scn4aQ9ER60 Gm10849-201ENSMUST00000100397 618 ntBASIC30.76■■■□□ 2.51
Scn4aQ9ER60 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
Scn4aQ9ER60 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
Scn4aQ9ER60 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
Scn4aQ9ER60 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
Scn4aQ9ER60 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
Scn4aQ9ER60 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC30.75■■■□□ 2.51
Scn4aQ9ER60 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
Scn4aQ9ER60 Gm42569-201ENSMUST00000200539 472 ntBASIC30.75■■■□□ 2.51
Scn4aQ9ER60 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC30.75■■■□□ 2.51
Scn4aQ9ER60 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC30.75■■■□□ 2.51
Scn4aQ9ER60 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC30.74■■■□□ 2.51
Scn4aQ9ER60 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
Scn4aQ9ER60 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
Scn4aQ9ER60 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
Scn4aQ9ER60 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
Scn4aQ9ER60 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
Scn4aQ9ER60 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
Scn4aQ9ER60 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
Scn4aQ9ER60 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
Scn4aQ9ER60 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC30.7■■■□□ 2.51
Scn4aQ9ER60 Mir7075-201ENSMUST00000184187 82 ntBASIC30.7■■■□□ 2.51
Scn4aQ9ER60 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC30.7■■■□□ 2.5
Scn4aQ9ER60 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
Scn4aQ9ER60 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC30.7■■■□□ 2.5
Scn4aQ9ER60 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC30.69■■■□□ 2.5
Scn4aQ9ER60 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Scn4aQ9ER60 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC30.69■■■□□ 2.5
Scn4aQ9ER60 Gm12669-201ENSMUST00000122162 1009 ntBASIC30.68■■■□□ 2.5
Scn4aQ9ER60 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
Scn4aQ9ER60 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC30.68■■■□□ 2.5
Scn4aQ9ER60 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Scn4aQ9ER60 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Scn4aQ9ER60 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
Scn4aQ9ER60 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
Scn4aQ9ER60 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC30.67■■■□□ 2.5
Scn4aQ9ER60 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
Scn4aQ9ER60 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC30.66■■■□□ 2.5
Scn4aQ9ER60 Gm43173-201ENSMUST00000202246 593 ntBASIC30.66■■■□□ 2.5
Scn4aQ9ER60 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Scn4aQ9ER60 Fezf2-202ENSMUST00000224023 1917 ntBASIC30.65■■■□□ 2.5
Scn4aQ9ER60 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC30.65■■■□□ 2.5
Scn4aQ9ER60 Gm12251-201ENSMUST00000117893 792 ntBASIC30.64■■■□□ 2.5
Scn4aQ9ER60 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC30.64■■■□□ 2.5
Scn4aQ9ER60 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
Scn4aQ9ER60 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC30.63■■■□□ 2.49
Scn4aQ9ER60 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC30.63■■■□□ 2.49
Scn4aQ9ER60 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC30.63■■■□□ 2.49
Scn4aQ9ER60 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
Scn4aQ9ER60 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC30.63■■■□□ 2.49
Scn4aQ9ER60 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Scn4aQ9ER60 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC30.63■■■□□ 2.49
Scn4aQ9ER60 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC30.63■■■□□ 2.49
Scn4aQ9ER60 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Scn4aQ9ER60 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Scn4aQ9ER60 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC30.62■■■□□ 2.49
Scn4aQ9ER60 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Scn4aQ9ER60 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
Scn4aQ9ER60 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Scn4aQ9ER60 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC30.62■■■□□ 2.49
Scn4aQ9ER60 Zxda-201ENSMUST00000117281 2621 ntBASIC30.61■■■□□ 2.49
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms