Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Use1Q9CQ56 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Use1Q9CQ56 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Use1Q9CQ56 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Use1Q9CQ56 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC20.22■□□□□ 0.83
Use1Q9CQ56 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC20.22■□□□□ 0.83
Use1Q9CQ56 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Use1Q9CQ56 AC117769.4-201ENSMUST00000225679 685 ntBASIC20.22■□□□□ 0.83
Use1Q9CQ56 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Use1Q9CQ56 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Use1Q9CQ56 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Use1Q9CQ56 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC20.21■□□□□ 0.83
Use1Q9CQ56 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Use1Q9CQ56 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Use1Q9CQ56 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Use1Q9CQ56 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC20.21■□□□□ 0.83
Use1Q9CQ56 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Use1Q9CQ56 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Use1Q9CQ56 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Use1Q9CQ56 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Use1Q9CQ56 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Use1Q9CQ56 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Use1Q9CQ56 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Use1Q9CQ56 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Use1Q9CQ56 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC20.19■□□□□ 0.82
Use1Q9CQ56 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Use1Q9CQ56 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Use1Q9CQ56 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC20.19■□□□□ 0.82
Use1Q9CQ56 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Use1Q9CQ56 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Use1Q9CQ56 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
Use1Q9CQ56 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Use1Q9CQ56 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Use1Q9CQ56 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Use1Q9CQ56 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Use1Q9CQ56 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Use1Q9CQ56 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Use1Q9CQ56 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC20.18■□□□□ 0.82
Use1Q9CQ56 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Use1Q9CQ56 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Use1Q9CQ56 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC20.18■□□□□ 0.82
Use1Q9CQ56 Gm9806-201ENSMUST00000051080 552 ntBASIC20.18■□□□□ 0.82
Use1Q9CQ56 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Use1Q9CQ56 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Use1Q9CQ56 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC20.17■□□□□ 0.82
Use1Q9CQ56 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Use1Q9CQ56 Scarna2-201ENSMUST00000157560 414 ntBASIC20.17■□□□□ 0.82
Use1Q9CQ56 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC20.17■□□□□ 0.82
Use1Q9CQ56 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC20.17■□□□□ 0.82
Use1Q9CQ56 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Use1Q9CQ56 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Use1Q9CQ56 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
Use1Q9CQ56 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Use1Q9CQ56 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Use1Q9CQ56 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Use1Q9CQ56 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Use1Q9CQ56 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Use1Q9CQ56 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Use1Q9CQ56 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Use1Q9CQ56 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Use1Q9CQ56 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Use1Q9CQ56 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Use1Q9CQ56 Gm32051-202ENSMUST00000197905 2385 ntBASIC20.15■□□□□ 0.82
Use1Q9CQ56 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Use1Q9CQ56 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Use1Q9CQ56 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Use1Q9CQ56 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Use1Q9CQ56 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Use1Q9CQ56 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Use1Q9CQ56 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Use1Q9CQ56 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC20.15■□□□□ 0.82
Use1Q9CQ56 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
Use1Q9CQ56 Gm16437-201ENSMUST00000025669 507 ntBASIC20.14■□□□□ 0.81
Use1Q9CQ56 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Use1Q9CQ56 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Use1Q9CQ56 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC20.13■□□□□ 0.81
Use1Q9CQ56 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Use1Q9CQ56 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Use1Q9CQ56 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC20.13■□□□□ 0.81
Use1Q9CQ56 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Use1Q9CQ56 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
Use1Q9CQ56 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Use1Q9CQ56 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
Use1Q9CQ56 Gm11687-201ENSMUST00000118911 886 ntBASIC20.12■□□□□ 0.81
Use1Q9CQ56 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Use1Q9CQ56 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Use1Q9CQ56 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Use1Q9CQ56 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
Use1Q9CQ56 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Use1Q9CQ56 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC20.11■□□□□ 0.81
Use1Q9CQ56 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Use1Q9CQ56 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Use1Q9CQ56 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC20.11■□□□□ 0.81
Use1Q9CQ56 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Use1Q9CQ56 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Use1Q9CQ56 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Use1Q9CQ56 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Use1Q9CQ56 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC20.1■□□□□ 0.81
Use1Q9CQ56 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Use1Q9CQ56 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 46.5 ms