Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC23.7■■□□□ 1.38
Prpf40aQ9R1C7 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Prpf40aQ9R1C7 AC153524.1-201ENSMUST00000220436 1935 ntBASIC23.7■■□□□ 1.38
Prpf40aQ9R1C7 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.38
Prpf40aQ9R1C7 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC23.69■■□□□ 1.38
Prpf40aQ9R1C7 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Prpf40aQ9R1C7 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Prpf40aQ9R1C7 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Prpf40aQ9R1C7 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Prpf40aQ9R1C7 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Prpf40aQ9R1C7 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
Prpf40aQ9R1C7 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Prpf40aQ9R1C7 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Prpf40aQ9R1C7 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Prpf40aQ9R1C7 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Prpf40aQ9R1C7 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Prpf40aQ9R1C7 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Prpf40aQ9R1C7 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC23.67■■□□□ 1.38
Prpf40aQ9R1C7 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Prpf40aQ9R1C7 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Prpf40aQ9R1C7 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Prpf40aQ9R1C7 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
Prpf40aQ9R1C7 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC23.66■■□□□ 1.38
Prpf40aQ9R1C7 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Prpf40aQ9R1C7 Gm10420-201ENSMUST00000121713 882 ntBASIC23.66■■□□□ 1.38
Prpf40aQ9R1C7 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Prpf40aQ9R1C7 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC23.66■■□□□ 1.38
Prpf40aQ9R1C7 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Prpf40aQ9R1C7 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
Prpf40aQ9R1C7 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
Prpf40aQ9R1C7 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
Prpf40aQ9R1C7 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
Prpf40aQ9R1C7 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Prpf40aQ9R1C7 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Prpf40aQ9R1C7 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Prpf40aQ9R1C7 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC23.64■■□□□ 1.37
Prpf40aQ9R1C7 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
Prpf40aQ9R1C7 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC23.64■■□□□ 1.37
Prpf40aQ9R1C7 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
Prpf40aQ9R1C7 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC23.63■■□□□ 1.37
Prpf40aQ9R1C7 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
Prpf40aQ9R1C7 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Prpf40aQ9R1C7 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC23.63■■□□□ 1.37
Prpf40aQ9R1C7 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Prpf40aQ9R1C7 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Prpf40aQ9R1C7 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Prpf40aQ9R1C7 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Prpf40aQ9R1C7 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Prpf40aQ9R1C7 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC23.61■■□□□ 1.37
Prpf40aQ9R1C7 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Prpf40aQ9R1C7 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
Prpf40aQ9R1C7 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
Prpf40aQ9R1C7 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Prpf40aQ9R1C7 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
Prpf40aQ9R1C7 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC23.6■■□□□ 1.37
Prpf40aQ9R1C7 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC23.6■■□□□ 1.37
Prpf40aQ9R1C7 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
Prpf40aQ9R1C7 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Prpf40aQ9R1C7 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
Prpf40aQ9R1C7 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
Prpf40aQ9R1C7 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Prpf40aQ9R1C7 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
Prpf40aQ9R1C7 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
Prpf40aQ9R1C7 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
Prpf40aQ9R1C7 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Prpf40aQ9R1C7 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Prpf40aQ9R1C7 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Prpf40aQ9R1C7 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Prpf40aQ9R1C7 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.37
Prpf40aQ9R1C7 Gm5067-201ENSMUST00000170449 1009 ntBASIC23.58■■□□□ 1.37
Prpf40aQ9R1C7 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Prpf40aQ9R1C7 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
Prpf40aQ9R1C7 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
Prpf40aQ9R1C7 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC23.57■■□□□ 1.36
Prpf40aQ9R1C7 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
Prpf40aQ9R1C7 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
Prpf40aQ9R1C7 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
Prpf40aQ9R1C7 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Prpf40aQ9R1C7 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Prpf40aQ9R1C7 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Prpf40aQ9R1C7 Gm43592-201ENSMUST00000196922 1165 ntBASIC23.55■■□□□ 1.36
Prpf40aQ9R1C7 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Prpf40aQ9R1C7 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
Prpf40aQ9R1C7 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
Prpf40aQ9R1C7 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
Prpf40aQ9R1C7 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Prpf40aQ9R1C7 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Prpf40aQ9R1C7 Gm22567-201ENSMUST00000175542 342 ntBASIC23.54■■□□□ 1.36
Prpf40aQ9R1C7 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Prpf40aQ9R1C7 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
Prpf40aQ9R1C7 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Prpf40aQ9R1C7 Gm26766-202ENSMUST00000227544 2347 ntBASIC23.54■■□□□ 1.36
Prpf40aQ9R1C7 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC23.53■■□□□ 1.36
Prpf40aQ9R1C7 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
Prpf40aQ9R1C7 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Prpf40aQ9R1C7 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
Prpf40aQ9R1C7 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC23.53■■□□□ 1.36
Prpf40aQ9R1C7 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
Prpf40aQ9R1C7 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
Prpf40aQ9R1C7 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Retrieved 100 of 76,532 protein–RNA pairs in 100.2 ms