Protein–RNA interactions for Protein: Q91Y16

Pcdha3, Protocadherin alpha 3, mousemouse

Predictions only

Length 942 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha3Q91Y16 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Pcdha3Q91Y16 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Pcdha3Q91Y16 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Pcdha3Q91Y16 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Pcdha3Q91Y16 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Pcdha3Q91Y16 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Pcdha3Q91Y16 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Pcdha3Q91Y16 Gm43592-201ENSMUST00000196922 1165 ntBASIC22.59■■□□□ 1.21
Pcdha3Q91Y16 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Pcdha3Q91Y16 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC22.59■■□□□ 1.21
Pcdha3Q91Y16 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC22.59■■□□□ 1.21
Pcdha3Q91Y16 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
Pcdha3Q91Y16 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Pcdha3Q91Y16 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC22.58■■□□□ 1.21
Pcdha3Q91Y16 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Pcdha3Q91Y16 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Pcdha3Q91Y16 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
Pcdha3Q91Y16 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
Pcdha3Q91Y16 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
Pcdha3Q91Y16 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC22.57■■□□□ 1.2
Pcdha3Q91Y16 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
Pcdha3Q91Y16 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Pcdha3Q91Y16 AC117245.4-201ENSMUST00000217388 1646 ntBASIC22.56■■□□□ 1.2
Pcdha3Q91Y16 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Pcdha3Q91Y16 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Pcdha3Q91Y16 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Pcdha3Q91Y16 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Pcdha3Q91Y16 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Pcdha3Q91Y16 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Pcdha3Q91Y16 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Pcdha3Q91Y16 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Pcdha3Q91Y16 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Pcdha3Q91Y16 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Pcdha3Q91Y16 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Pcdha3Q91Y16 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Pcdha3Q91Y16 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Pcdha3Q91Y16 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Pcdha3Q91Y16 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC22.53■■□□□ 1.2
Pcdha3Q91Y16 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
Pcdha3Q91Y16 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Pcdha3Q91Y16 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Pcdha3Q91Y16 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC22.53■■□□□ 1.2
Pcdha3Q91Y16 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Pcdha3Q91Y16 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
Pcdha3Q91Y16 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Pcdha3Q91Y16 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC22.52■■□□□ 1.2
Pcdha3Q91Y16 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Pcdha3Q91Y16 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
Pcdha3Q91Y16 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
Pcdha3Q91Y16 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
Pcdha3Q91Y16 Gm26766-202ENSMUST00000227544 2347 ntBASIC22.52■■□□□ 1.2
Pcdha3Q91Y16 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC22.51■■□□□ 1.19
Pcdha3Q91Y16 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Pcdha3Q91Y16 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Pcdha3Q91Y16 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC22.51■■□□□ 1.19
Pcdha3Q91Y16 AC115037.1-201ENSMUST00000223391 2173 ntBASIC22.51■■□□□ 1.19
Pcdha3Q91Y16 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Pcdha3Q91Y16 Gm5921-201ENSMUST00000075898 882 ntBASIC22.51■■□□□ 1.19
Pcdha3Q91Y16 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Pcdha3Q91Y16 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Pcdha3Q91Y16 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Pcdha3Q91Y16 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Pcdha3Q91Y16 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Pcdha3Q91Y16 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Pcdha3Q91Y16 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Pcdha3Q91Y16 AC153962.1-201ENSMUST00000218530 1948 ntBASIC22.5■■□□□ 1.19
Pcdha3Q91Y16 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Pcdha3Q91Y16 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Pcdha3Q91Y16 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC22.49■■□□□ 1.19
Pcdha3Q91Y16 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC22.49■■□□□ 1.19
Pcdha3Q91Y16 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Pcdha3Q91Y16 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC22.49■■□□□ 1.19
Pcdha3Q91Y16 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Pcdha3Q91Y16 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Pcdha3Q91Y16 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
Pcdha3Q91Y16 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC22.48■■□□□ 1.19
Pcdha3Q91Y16 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Pcdha3Q91Y16 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC22.48■■□□□ 1.19
Pcdha3Q91Y16 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Pcdha3Q91Y16 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Pcdha3Q91Y16 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
Pcdha3Q91Y16 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Pcdha3Q91Y16 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Pcdha3Q91Y16 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC22.47■■□□□ 1.19
Pcdha3Q91Y16 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Pcdha3Q91Y16 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Pcdha3Q91Y16 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Pcdha3Q91Y16 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
Pcdha3Q91Y16 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Pcdha3Q91Y16 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC22.46■■□□□ 1.19
Pcdha3Q91Y16 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
Pcdha3Q91Y16 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC22.46■■□□□ 1.19
Pcdha3Q91Y16 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Pcdha3Q91Y16 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Pcdha3Q91Y16 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC22.45■■□□□ 1.19
Pcdha3Q91Y16 Dmtn-209ENSMUST00000228295 2572 ntBASIC22.45■■□□□ 1.18
Pcdha3Q91Y16 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Pcdha3Q91Y16 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
Pcdha3Q91Y16 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Pcdha3Q91Y16 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms