Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
Usp40Q8BWR4 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
Usp40Q8BWR4 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC30.1■■■□□ 2.41
Usp40Q8BWR4 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC30.1■■■□□ 2.41
Usp40Q8BWR4 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
Usp40Q8BWR4 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC30.1■■■□□ 2.41
Usp40Q8BWR4 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC30.09■■■□□ 2.41
Usp40Q8BWR4 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC30.09■■■□□ 2.41
Usp40Q8BWR4 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC30.09■■■□□ 2.41
Usp40Q8BWR4 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
Usp40Q8BWR4 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC30.08■■■□□ 2.41
Usp40Q8BWR4 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
Usp40Q8BWR4 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
Usp40Q8BWR4 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC30.08■■■□□ 2.41
Usp40Q8BWR4 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC30.08■■■□□ 2.41
Usp40Q8BWR4 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC30.07■■■□□ 2.4
Usp40Q8BWR4 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC30.07■■■□□ 2.4
Usp40Q8BWR4 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC30.07■■■□□ 2.4
Usp40Q8BWR4 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Usp40Q8BWR4 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC30.06■■■□□ 2.4
Usp40Q8BWR4 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC30.06■■■□□ 2.4
Usp40Q8BWR4 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Usp40Q8BWR4 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Usp40Q8BWR4 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC30.06■■■□□ 2.4
Usp40Q8BWR4 Gm11847-201ENSMUST00000125165 1119 ntBASIC30.05■■■□□ 2.4
Usp40Q8BWR4 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC30.05■■■□□ 2.4
Usp40Q8BWR4 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
Usp40Q8BWR4 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
Usp40Q8BWR4 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC30.04■■■□□ 2.4
Usp40Q8BWR4 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
Usp40Q8BWR4 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC30.04■■■□□ 2.4
Usp40Q8BWR4 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC30.04■■■□□ 2.4
Usp40Q8BWR4 Gm7417-201ENSMUST00000192950 473 ntBASIC30.04■■■□□ 2.4
Usp40Q8BWR4 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
Usp40Q8BWR4 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC30.04■■■□□ 2.4
Usp40Q8BWR4 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
Usp40Q8BWR4 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
Usp40Q8BWR4 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC30.03■■■□□ 2.4
Usp40Q8BWR4 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC30.03■■■□□ 2.4
Usp40Q8BWR4 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
Usp40Q8BWR4 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
Usp40Q8BWR4 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC30.03■■■□□ 2.4
Usp40Q8BWR4 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
Usp40Q8BWR4 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC30.02■■■□□ 2.4
Usp40Q8BWR4 Gm15039-201ENSMUST00000118914 875 ntBASIC30.02■■■□□ 2.4
Usp40Q8BWR4 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC30.02■■■□□ 2.4
Usp40Q8BWR4 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC30.02■■■□□ 2.4
Usp40Q8BWR4 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC30.02■■■□□ 2.4
Usp40Q8BWR4 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC30.02■■■□□ 2.4
Usp40Q8BWR4 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC30.01■■■□□ 2.39
Usp40Q8BWR4 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
Usp40Q8BWR4 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
Usp40Q8BWR4 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
Usp40Q8BWR4 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
Usp40Q8BWR4 Gm8093-201ENSMUST00000128935 1892 ntBASIC30■■■□□ 2.39
Usp40Q8BWR4 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC30■■■□□ 2.39
Usp40Q8BWR4 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC30■■■□□ 2.39
Usp40Q8BWR4 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC30■■■□□ 2.39
Usp40Q8BWR4 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
Usp40Q8BWR4 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC29.99■■■□□ 2.39
Usp40Q8BWR4 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC29.99■■■□□ 2.39
Usp40Q8BWR4 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC29.98■■■□□ 2.39
Usp40Q8BWR4 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC29.98■■■□□ 2.39
Usp40Q8BWR4 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
Usp40Q8BWR4 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
Usp40Q8BWR4 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
Usp40Q8BWR4 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC29.97■■■□□ 2.39
Usp40Q8BWR4 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC29.97■■■□□ 2.39
Usp40Q8BWR4 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
Usp40Q8BWR4 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC29.96■■■□□ 2.39
Usp40Q8BWR4 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
Usp40Q8BWR4 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC29.96■■■□□ 2.39
Usp40Q8BWR4 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC29.95■■■□□ 2.39
Usp40Q8BWR4 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
Usp40Q8BWR4 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC29.95■■■□□ 2.39
Usp40Q8BWR4 Gm40881-201ENSMUST00000223397 166 ntBASIC29.95■■■□□ 2.39
Usp40Q8BWR4 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
Usp40Q8BWR4 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC29.94■■■□□ 2.38
Usp40Q8BWR4 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC29.94■■■□□ 2.38
Usp40Q8BWR4 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
Usp40Q8BWR4 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
Usp40Q8BWR4 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC29.94■■■□□ 2.38
Usp40Q8BWR4 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
Usp40Q8BWR4 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC29.94■■■□□ 2.38
Usp40Q8BWR4 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC29.93■■■□□ 2.38
Usp40Q8BWR4 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC29.93■■■□□ 2.38
Usp40Q8BWR4 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
Usp40Q8BWR4 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC29.92■■■□□ 2.38
Usp40Q8BWR4 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
Usp40Q8BWR4 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
Usp40Q8BWR4 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
Usp40Q8BWR4 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
Usp40Q8BWR4 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
Usp40Q8BWR4 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
Usp40Q8BWR4 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
Usp40Q8BWR4 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
Usp40Q8BWR4 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC29.9■■■□□ 2.38
Usp40Q8BWR4 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC29.9■■■□□ 2.38
Usp40Q8BWR4 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
Usp40Q8BWR4 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
Retrieved 100 of 76,532 protein–RNA pairs in 66.5 ms