Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
Col11a1Q61245 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Col11a1Q61245 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC25.05■■□□□ 1.6
Col11a1Q61245 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC25.05■■□□□ 1.6
Col11a1Q61245 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
Col11a1Q61245 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
Col11a1Q61245 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
Col11a1Q61245 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Col11a1Q61245 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC25.03■■□□□ 1.6
Col11a1Q61245 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC25.03■■□□□ 1.6
Col11a1Q61245 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
Col11a1Q61245 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Col11a1Q61245 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC25.02■■□□□ 1.6
Col11a1Q61245 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
Col11a1Q61245 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
Col11a1Q61245 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Col11a1Q61245 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Col11a1Q61245 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
Col11a1Q61245 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
Col11a1Q61245 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Col11a1Q61245 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Col11a1Q61245 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC25.01■■□□□ 1.59
Col11a1Q61245 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC25.01■■□□□ 1.59
Col11a1Q61245 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC25.01■■□□□ 1.59
Col11a1Q61245 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC25■■□□□ 1.59
Col11a1Q61245 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC25■■□□□ 1.59
Col11a1Q61245 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC25■■□□□ 1.59
Col11a1Q61245 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Col11a1Q61245 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
Col11a1Q61245 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC25■■□□□ 1.59
Col11a1Q61245 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC24.99■■□□□ 1.59
Col11a1Q61245 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC24.98■■□□□ 1.59
Col11a1Q61245 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Col11a1Q61245 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Col11a1Q61245 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC24.98■■□□□ 1.59
Col11a1Q61245 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC24.98■■□□□ 1.59
Col11a1Q61245 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC24.98■■□□□ 1.59
Col11a1Q61245 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Col11a1Q61245 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
Col11a1Q61245 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC24.97■■□□□ 1.59
Col11a1Q61245 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Col11a1Q61245 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC24.97■■□□□ 1.59
Col11a1Q61245 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC24.97■■□□□ 1.59
Col11a1Q61245 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Col11a1Q61245 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Col11a1Q61245 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Col11a1Q61245 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
Col11a1Q61245 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
Col11a1Q61245 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC24.95■■□□□ 1.58
Col11a1Q61245 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC24.95■■□□□ 1.58
Col11a1Q61245 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC24.95■■□□□ 1.58
Col11a1Q61245 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
Col11a1Q61245 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Col11a1Q61245 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Col11a1Q61245 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Col11a1Q61245 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
Col11a1Q61245 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC24.93■■□□□ 1.58
Col11a1Q61245 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC24.93■■□□□ 1.58
Col11a1Q61245 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC24.93■■□□□ 1.58
Col11a1Q61245 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Col11a1Q61245 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
Col11a1Q61245 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Col11a1Q61245 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC24.93■■□□□ 1.58
Col11a1Q61245 Gm18284-201ENSMUST00000172604 624 ntBASIC24.92■■□□□ 1.58
Col11a1Q61245 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Col11a1Q61245 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC24.91■■□□□ 1.58
Col11a1Q61245 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
Col11a1Q61245 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
Col11a1Q61245 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC24.91■■□□□ 1.58
Col11a1Q61245 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC24.91■■□□□ 1.58
Col11a1Q61245 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
Col11a1Q61245 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC24.91■■□□□ 1.58
Col11a1Q61245 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
Col11a1Q61245 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC24.9■■□□□ 1.58
Col11a1Q61245 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
Col11a1Q61245 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC24.9■■□□□ 1.58
Col11a1Q61245 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC24.9■■□□□ 1.58
Col11a1Q61245 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
Col11a1Q61245 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC24.9■■□□□ 1.58
Col11a1Q61245 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
Col11a1Q61245 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC24.9■■□□□ 1.58
Col11a1Q61245 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC24.89■■□□□ 1.58
Col11a1Q61245 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
Col11a1Q61245 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
Col11a1Q61245 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Col11a1Q61245 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC24.88■■□□□ 1.57
Col11a1Q61245 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
Col11a1Q61245 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Col11a1Q61245 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC24.87■■□□□ 1.57
Col11a1Q61245 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Col11a1Q61245 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
Col11a1Q61245 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
Col11a1Q61245 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Col11a1Q61245 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC24.86■■□□□ 1.57
Col11a1Q61245 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
Col11a1Q61245 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
Col11a1Q61245 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Col11a1Q61245 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC24.85■■□□□ 1.57
Col11a1Q61245 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Col11a1Q61245 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC24.84■■□□□ 1.57
Retrieved 100 of 76,532 protein–RNA pairs in 114.1 ms