Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Trav6-3Q5R1E6 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav6-3Q5R1E6 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav6-3Q5R1E6 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trav6-3Q5R1E6 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav6-3Q5R1E6 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Trav6-3Q5R1E6 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Trav6-3Q5R1E6 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
Trav6-3Q5R1E6 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav6-3Q5R1E6 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC17.36■□□□□ 0.37
Trav6-3Q5R1E6 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav6-3Q5R1E6 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trav6-3Q5R1E6 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav6-3Q5R1E6 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trav6-3Q5R1E6 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav6-3Q5R1E6 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC17.35■□□□□ 0.37
Trav6-3Q5R1E6 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav6-3Q5R1E6 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
Trav6-3Q5R1E6 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC17.35■□□□□ 0.37
Trav6-3Q5R1E6 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav6-3Q5R1E6 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav6-3Q5R1E6 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC17.34■□□□□ 0.37
Trav6-3Q5R1E6 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav6-3Q5R1E6 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav6-3Q5R1E6 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC17.34■□□□□ 0.37
Trav6-3Q5R1E6 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Trav6-3Q5R1E6 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav6-3Q5R1E6 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav6-3Q5R1E6 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav6-3Q5R1E6 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav6-3Q5R1E6 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav6-3Q5R1E6 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav6-3Q5R1E6 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC17.34■□□□□ 0.37
Trav6-3Q5R1E6 Gm32051-202ENSMUST00000197905 2385 ntBASIC17.33■□□□□ 0.37
Trav6-3Q5R1E6 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trav6-3Q5R1E6 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Trav6-3Q5R1E6 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC17.33■□□□□ 0.36
Trav6-3Q5R1E6 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trav6-3Q5R1E6 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Trav6-3Q5R1E6 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trav6-3Q5R1E6 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trav6-3Q5R1E6 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC17.33■□□□□ 0.36
Trav6-3Q5R1E6 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.36
Trav6-3Q5R1E6 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trav6-3Q5R1E6 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trav6-3Q5R1E6 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trav6-3Q5R1E6 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Trav6-3Q5R1E6 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trav6-3Q5R1E6 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trav6-3Q5R1E6 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Trav6-3Q5R1E6 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav6-3Q5R1E6 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav6-3Q5R1E6 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC17.31■□□□□ 0.36
Trav6-3Q5R1E6 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav6-3Q5R1E6 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav6-3Q5R1E6 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav6-3Q5R1E6 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav6-3Q5R1E6 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav6-3Q5R1E6 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC17.3■□□□□ 0.36
Trav6-3Q5R1E6 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav6-3Q5R1E6 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav6-3Q5R1E6 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC17.3■□□□□ 0.36
Trav6-3Q5R1E6 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav6-3Q5R1E6 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC17.29■□□□□ 0.36
Trav6-3Q5R1E6 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
Trav6-3Q5R1E6 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trav6-3Q5R1E6 Gm37415-201ENSMUST00000192265 2054 ntBASIC17.29■□□□□ 0.36
Trav6-3Q5R1E6 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Trav6-3Q5R1E6 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
Trav6-3Q5R1E6 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC17.29■□□□□ 0.36
Trav6-3Q5R1E6 Gm9806-201ENSMUST00000051080 552 ntBASIC17.29■□□□□ 0.36
Trav6-3Q5R1E6 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trav6-3Q5R1E6 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Trav6-3Q5R1E6 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC17.29■□□□□ 0.36
Trav6-3Q5R1E6 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Trav6-3Q5R1E6 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trav6-3Q5R1E6 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trav6-3Q5R1E6 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC17.29■□□□□ 0.36
Trav6-3Q5R1E6 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trav6-3Q5R1E6 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC17.28■□□□□ 0.36
Trav6-3Q5R1E6 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC17.28■□□□□ 0.36
Trav6-3Q5R1E6 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trav6-3Q5R1E6 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Trav6-3Q5R1E6 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Trav6-3Q5R1E6 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC17.28■□□□□ 0.36
Trav6-3Q5R1E6 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trav6-3Q5R1E6 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trav6-3Q5R1E6 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trav6-3Q5R1E6 Scarna2-201ENSMUST00000157560 414 ntBASIC17.27■□□□□ 0.36
Trav6-3Q5R1E6 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trav6-3Q5R1E6 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Trav6-3Q5R1E6 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trav6-3Q5R1E6 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trav6-3Q5R1E6 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Trav6-3Q5R1E6 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trav6-3Q5R1E6 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Trav6-3Q5R1E6 Gm42418-201ENSMUST00000182010 1831 ntBASIC17.26■□□□□ 0.35
Trav6-3Q5R1E6 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trav6-3Q5R1E6 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trav6-3Q5R1E6 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 50.7 ms