Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
Ddb1Q3U1J4 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC28.15■■■□□ 2.1
Ddb1Q3U1J4 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC28.15■■■□□ 2.1
Ddb1Q3U1J4 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC28.15■■■□□ 2.1
Ddb1Q3U1J4 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC28.15■■■□□ 2.1
Ddb1Q3U1J4 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC28.15■■■□□ 2.1
Ddb1Q3U1J4 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
Ddb1Q3U1J4 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC28.14■■■□□ 2.1
Ddb1Q3U1J4 Flvcr1-202ENSMUST00000191946 1216 ntBASIC28.14■■■□□ 2.1
Ddb1Q3U1J4 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC28.14■■■□□ 2.1
Ddb1Q3U1J4 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC28.14■■■□□ 2.1
Ddb1Q3U1J4 AC122428.3-201ENSMUST00000215551 2290 ntBASIC28.13■■■□□ 2.09
Ddb1Q3U1J4 Gm8093-201ENSMUST00000128935 1892 ntBASIC28.13■■■□□ 2.09
Ddb1Q3U1J4 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
Ddb1Q3U1J4 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC28.13■■■□□ 2.09
Ddb1Q3U1J4 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
Ddb1Q3U1J4 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
Ddb1Q3U1J4 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC28.12■■■□□ 2.09
Ddb1Q3U1J4 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
Ddb1Q3U1J4 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC28.11■■■□□ 2.09
Ddb1Q3U1J4 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
Ddb1Q3U1J4 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC28.1■■■□□ 2.09
Ddb1Q3U1J4 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC28.1■■■□□ 2.09
Ddb1Q3U1J4 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC28.1■■■□□ 2.09
Ddb1Q3U1J4 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC28.09■■■□□ 2.09
Ddb1Q3U1J4 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC28.09■■■□□ 2.09
Ddb1Q3U1J4 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
Ddb1Q3U1J4 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC28.09■■■□□ 2.09
Ddb1Q3U1J4 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Ddb1Q3U1J4 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Ddb1Q3U1J4 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Ddb1Q3U1J4 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
Ddb1Q3U1J4 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
Ddb1Q3U1J4 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
Ddb1Q3U1J4 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC28.08■■■□□ 2.09
Ddb1Q3U1J4 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC28.08■■■□□ 2.09
Ddb1Q3U1J4 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC28.08■■■□□ 2.09
Ddb1Q3U1J4 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC28.08■■■□□ 2.09
Ddb1Q3U1J4 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
Ddb1Q3U1J4 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC28.07■■■□□ 2.08
Ddb1Q3U1J4 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
Ddb1Q3U1J4 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC28.07■■■□□ 2.08
Ddb1Q3U1J4 Gm8495-201ENSMUST00000188740 694 ntBASIC28.06■■■□□ 2.08
Ddb1Q3U1J4 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC28.06■■■□□ 2.08
Ddb1Q3U1J4 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
Ddb1Q3U1J4 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC28.05■■■□□ 2.08
Ddb1Q3U1J4 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC28.05■■■□□ 2.08
Ddb1Q3U1J4 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
Ddb1Q3U1J4 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC28.04■■■□□ 2.08
Ddb1Q3U1J4 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
Ddb1Q3U1J4 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
Ddb1Q3U1J4 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
Ddb1Q3U1J4 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC28.04■■■□□ 2.08
Ddb1Q3U1J4 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
Ddb1Q3U1J4 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC28.02■■■□□ 2.08
Ddb1Q3U1J4 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
Ddb1Q3U1J4 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
Ddb1Q3U1J4 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC28.02■■■□□ 2.08
Ddb1Q3U1J4 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
Ddb1Q3U1J4 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC28.01■■■□□ 2.07
Ddb1Q3U1J4 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
Ddb1Q3U1J4 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
Ddb1Q3U1J4 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
Ddb1Q3U1J4 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC28■■■□□ 2.07
Ddb1Q3U1J4 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC28■■■□□ 2.07
Ddb1Q3U1J4 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC28■■■□□ 2.07
Ddb1Q3U1J4 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC27.99■■■□□ 2.07
Ddb1Q3U1J4 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
Ddb1Q3U1J4 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
Ddb1Q3U1J4 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC27.99■■■□□ 2.07
Ddb1Q3U1J4 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
Ddb1Q3U1J4 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC27.99■■■□□ 2.07
Ddb1Q3U1J4 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC27.99■■■□□ 2.07
Ddb1Q3U1J4 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC27.99■■■□□ 2.07
Ddb1Q3U1J4 Gm18284-201ENSMUST00000172604 624 ntBASIC27.98■■■□□ 2.07
Ddb1Q3U1J4 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
Ddb1Q3U1J4 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC27.98■■■□□ 2.07
Ddb1Q3U1J4 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC27.98■■■□□ 2.07
Ddb1Q3U1J4 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
Ddb1Q3U1J4 AC117245.4-201ENSMUST00000217388 1646 ntBASIC27.97■■■□□ 2.07
Ddb1Q3U1J4 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
Ddb1Q3U1J4 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
Ddb1Q3U1J4 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC27.96■■■□□ 2.07
Ddb1Q3U1J4 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC27.96■■■□□ 2.07
Ddb1Q3U1J4 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC27.96■■■□□ 2.07
Ddb1Q3U1J4 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
Ddb1Q3U1J4 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC27.95■■■□□ 2.07
Ddb1Q3U1J4 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.07
Ddb1Q3U1J4 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC27.95■■■□□ 2.07
Ddb1Q3U1J4 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC27.95■■■□□ 2.06
Ddb1Q3U1J4 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
Ddb1Q3U1J4 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC27.95■■■□□ 2.06
Ddb1Q3U1J4 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
Ddb1Q3U1J4 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC27.94■■■□□ 2.06
Ddb1Q3U1J4 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC27.94■■■□□ 2.06
Ddb1Q3U1J4 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
Ddb1Q3U1J4 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC27.94■■■□□ 2.06
Ddb1Q3U1J4 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
Ddb1Q3U1J4 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC27.94■■■□□ 2.06
Ddb1Q3U1J4 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
Retrieved 100 of 76,532 protein–RNA pairs in 64.2 ms