Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
Prpf40aQ9R1C7 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Prpf40aQ9R1C7 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Prpf40aQ9R1C7 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC23.85■■□□□ 1.41
Prpf40aQ9R1C7 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Prpf40aQ9R1C7 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Prpf40aQ9R1C7 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
Prpf40aQ9R1C7 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
Prpf40aQ9R1C7 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Prpf40aQ9R1C7 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
Prpf40aQ9R1C7 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
Prpf40aQ9R1C7 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Prpf40aQ9R1C7 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Prpf40aQ9R1C7 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC23.84■■□□□ 1.41
Prpf40aQ9R1C7 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Prpf40aQ9R1C7 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
Prpf40aQ9R1C7 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
Prpf40aQ9R1C7 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Prpf40aQ9R1C7 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC23.83■■□□□ 1.41
Prpf40aQ9R1C7 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Prpf40aQ9R1C7 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC23.83■■□□□ 1.41
Prpf40aQ9R1C7 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Prpf40aQ9R1C7 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
Prpf40aQ9R1C7 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC23.83■■□□□ 1.41
Prpf40aQ9R1C7 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Prpf40aQ9R1C7 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Prpf40aQ9R1C7 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Prpf40aQ9R1C7 Cap2-205ENSMUST00000225824 1634 ntBASIC23.82■■□□□ 1.4
Prpf40aQ9R1C7 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC23.82■■□□□ 1.4
Prpf40aQ9R1C7 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
Prpf40aQ9R1C7 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
Prpf40aQ9R1C7 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Prpf40aQ9R1C7 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC23.81■■□□□ 1.4
Prpf40aQ9R1C7 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Prpf40aQ9R1C7 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC23.81■■□□□ 1.4
Prpf40aQ9R1C7 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
Prpf40aQ9R1C7 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Prpf40aQ9R1C7 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Prpf40aQ9R1C7 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Prpf40aQ9R1C7 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Prpf40aQ9R1C7 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Prpf40aQ9R1C7 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Prpf40aQ9R1C7 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Prpf40aQ9R1C7 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
Prpf40aQ9R1C7 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Prpf40aQ9R1C7 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
Prpf40aQ9R1C7 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Prpf40aQ9R1C7 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Prpf40aQ9R1C7 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
Prpf40aQ9R1C7 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Prpf40aQ9R1C7 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC23.77■■□□□ 1.4
Prpf40aQ9R1C7 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
Prpf40aQ9R1C7 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC23.77■■□□□ 1.4
Prpf40aQ9R1C7 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Prpf40aQ9R1C7 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Prpf40aQ9R1C7 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Prpf40aQ9R1C7 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Prpf40aQ9R1C7 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Prpf40aQ9R1C7 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC23.76■■□□□ 1.39
Prpf40aQ9R1C7 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
Prpf40aQ9R1C7 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Prpf40aQ9R1C7 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC23.75■■□□□ 1.39
Prpf40aQ9R1C7 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
Prpf40aQ9R1C7 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
Prpf40aQ9R1C7 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
Prpf40aQ9R1C7 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Prpf40aQ9R1C7 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Prpf40aQ9R1C7 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Prpf40aQ9R1C7 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
Prpf40aQ9R1C7 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Prpf40aQ9R1C7 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Prpf40aQ9R1C7 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Prpf40aQ9R1C7 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Prpf40aQ9R1C7 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
Prpf40aQ9R1C7 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
Prpf40aQ9R1C7 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
Prpf40aQ9R1C7 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
Prpf40aQ9R1C7 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Prpf40aQ9R1C7 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Prpf40aQ9R1C7 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
Prpf40aQ9R1C7 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
Prpf40aQ9R1C7 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Prpf40aQ9R1C7 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Prpf40aQ9R1C7 Gm28731-201ENSMUST00000185564 1569 ntBASIC23.73■■□□□ 1.39
Prpf40aQ9R1C7 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC23.73■■□□□ 1.39
Prpf40aQ9R1C7 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Prpf40aQ9R1C7 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Prpf40aQ9R1C7 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Prpf40aQ9R1C7 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Prpf40aQ9R1C7 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC23.72■■□□□ 1.39
Prpf40aQ9R1C7 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Prpf40aQ9R1C7 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC23.72■■□□□ 1.39
Prpf40aQ9R1C7 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC23.72■■□□□ 1.39
Prpf40aQ9R1C7 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
Prpf40aQ9R1C7 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC23.71■■□□□ 1.39
Prpf40aQ9R1C7 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Prpf40aQ9R1C7 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
Prpf40aQ9R1C7 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC23.71■■□□□ 1.39
Prpf40aQ9R1C7 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Prpf40aQ9R1C7 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Retrieved 100 of 76,532 protein–RNA pairs in 110.5 ms