Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
Trim56Q80VI1 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Trim56Q80VI1 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC25.93■■□□□ 1.74
Trim56Q80VI1 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Trim56Q80VI1 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Trim56Q80VI1 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC25.93■■□□□ 1.74
Trim56Q80VI1 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC25.92■■□□□ 1.74
Trim56Q80VI1 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
Trim56Q80VI1 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC25.92■■□□□ 1.74
Trim56Q80VI1 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC25.92■■□□□ 1.74
Trim56Q80VI1 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
Trim56Q80VI1 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC25.91■■□□□ 1.74
Trim56Q80VI1 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC25.91■■□□□ 1.74
Trim56Q80VI1 Gm13238-201ENSMUST00000117655 780 ntBASIC25.91■■□□□ 1.74
Trim56Q80VI1 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Trim56Q80VI1 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC25.9■■□□□ 1.74
Trim56Q80VI1 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
Trim56Q80VI1 Nsd1-203ENSMUST00000224156 1149 ntBASIC25.89■■□□□ 1.74
Trim56Q80VI1 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC25.89■■□□□ 1.73
Trim56Q80VI1 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC25.88■■□□□ 1.73
Trim56Q80VI1 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Trim56Q80VI1 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC25.88■■□□□ 1.73
Trim56Q80VI1 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Trim56Q80VI1 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Trim56Q80VI1 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Trim56Q80VI1 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
Trim56Q80VI1 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
Trim56Q80VI1 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Trim56Q80VI1 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
Trim56Q80VI1 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Trim56Q80VI1 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Trim56Q80VI1 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Trim56Q80VI1 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC25.86■■□□□ 1.73
Trim56Q80VI1 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC25.85■■□□□ 1.73
Trim56Q80VI1 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Trim56Q80VI1 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
Trim56Q80VI1 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Trim56Q80VI1 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Trim56Q80VI1 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC25.85■■□□□ 1.73
Trim56Q80VI1 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Trim56Q80VI1 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
Trim56Q80VI1 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Trim56Q80VI1 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Trim56Q80VI1 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC25.84■■□□□ 1.73
Trim56Q80VI1 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC25.84■■□□□ 1.73
Trim56Q80VI1 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Trim56Q80VI1 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC25.84■■□□□ 1.73
Trim56Q80VI1 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC25.84■■□□□ 1.73
Trim56Q80VI1 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC25.83■■□□□ 1.73
Trim56Q80VI1 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC25.83■■□□□ 1.73
Trim56Q80VI1 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
Trim56Q80VI1 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
Trim56Q80VI1 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC25.82■■□□□ 1.72
Trim56Q80VI1 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC25.82■■□□□ 1.72
Trim56Q80VI1 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC25.82■■□□□ 1.72
Trim56Q80VI1 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Trim56Q80VI1 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC25.82■■□□□ 1.72
Trim56Q80VI1 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC25.82■■□□□ 1.72
Trim56Q80VI1 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC25.82■■□□□ 1.72
Trim56Q80VI1 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC25.82■■□□□ 1.72
Trim56Q80VI1 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
Trim56Q80VI1 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Trim56Q80VI1 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC25.81■■□□□ 1.72
Trim56Q80VI1 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
Trim56Q80VI1 Gm22567-201ENSMUST00000175542 342 ntBASIC25.81■■□□□ 1.72
Trim56Q80VI1 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC25.81■■□□□ 1.72
Trim56Q80VI1 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Trim56Q80VI1 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC25.8■■□□□ 1.72
Trim56Q80VI1 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC25.8■■□□□ 1.72
Trim56Q80VI1 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Trim56Q80VI1 Gm45444-201ENSMUST00000211394 898 ntBASIC25.8■■□□□ 1.72
Trim56Q80VI1 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC25.8■■□□□ 1.72
Trim56Q80VI1 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC25.8■■□□□ 1.72
Trim56Q80VI1 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC25.79■■□□□ 1.72
Trim56Q80VI1 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
Trim56Q80VI1 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC25.79■■□□□ 1.72
Trim56Q80VI1 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
Trim56Q80VI1 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
Trim56Q80VI1 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
Trim56Q80VI1 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC25.78■■□□□ 1.72
Trim56Q80VI1 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC25.78■■□□□ 1.72
Trim56Q80VI1 Nsd1-206ENSMUST00000224918 1001 ntBASIC25.78■■□□□ 1.72
Trim56Q80VI1 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
Trim56Q80VI1 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
Trim56Q80VI1 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC25.78■■□□□ 1.72
Trim56Q80VI1 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC25.78■■□□□ 1.72
Trim56Q80VI1 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC25.77■■□□□ 1.72
Trim56Q80VI1 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC25.77■■□□□ 1.72
Trim56Q80VI1 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Trim56Q80VI1 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC25.77■■□□□ 1.72
Trim56Q80VI1 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Trim56Q80VI1 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC25.77■■□□□ 1.72
Trim56Q80VI1 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC25.76■■□□□ 1.71
Trim56Q80VI1 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC25.76■■□□□ 1.71
Trim56Q80VI1 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC25.76■■□□□ 1.71
Trim56Q80VI1 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Trim56Q80VI1 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC25.75■■□□□ 1.71
Trim56Q80VI1 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
Trim56Q80VI1 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Trim56Q80VI1 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms