Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 AC140930.3-201ENSMUST00000222935 274 ntBASIC25.27■■□□□ 1.64
Col11a1Q61245 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
Col11a1Q61245 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
Col11a1Q61245 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC25.26■■□□□ 1.63
Col11a1Q61245 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
Col11a1Q61245 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
Col11a1Q61245 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Col11a1Q61245 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
Col11a1Q61245 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Col11a1Q61245 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Col11a1Q61245 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC25.25■■□□□ 1.63
Col11a1Q61245 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC25.24■■□□□ 1.63
Col11a1Q61245 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Col11a1Q61245 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Col11a1Q61245 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
Col11a1Q61245 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC25.24■■□□□ 1.63
Col11a1Q61245 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC25.24■■□□□ 1.63
Col11a1Q61245 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC25.24■■□□□ 1.63
Col11a1Q61245 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Col11a1Q61245 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Col11a1Q61245 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Col11a1Q61245 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC25.23■■□□□ 1.63
Col11a1Q61245 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC25.23■■□□□ 1.63
Col11a1Q61245 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Col11a1Q61245 Gm10399-202ENSMUST00000202768 748 ntBASIC25.22■■□□□ 1.63
Col11a1Q61245 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC25.22■■□□□ 1.63
Col11a1Q61245 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Col11a1Q61245 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC25.22■■□□□ 1.63
Col11a1Q61245 Nsd1-206ENSMUST00000224918 1001 ntBASIC25.21■■□□□ 1.63
Col11a1Q61245 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Col11a1Q61245 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Col11a1Q61245 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Col11a1Q61245 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Col11a1Q61245 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Col11a1Q61245 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Col11a1Q61245 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC25.2■■□□□ 1.62
Col11a1Q61245 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
Col11a1Q61245 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Col11a1Q61245 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC25.2■■□□□ 1.62
Col11a1Q61245 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC25.19■■□□□ 1.62
Col11a1Q61245 Gm12821-201ENSMUST00000120022 600 ntBASIC25.19■■□□□ 1.62
Col11a1Q61245 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Col11a1Q61245 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC25.19■■□□□ 1.62
Col11a1Q61245 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC25.19■■□□□ 1.62
Col11a1Q61245 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
Col11a1Q61245 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
Col11a1Q61245 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
Col11a1Q61245 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC25.17■■□□□ 1.62
Col11a1Q61245 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Col11a1Q61245 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Col11a1Q61245 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
Col11a1Q61245 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC25.16■■□□□ 1.62
Col11a1Q61245 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Col11a1Q61245 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Col11a1Q61245 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
Col11a1Q61245 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
Col11a1Q61245 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Col11a1Q61245 Gm11847-201ENSMUST00000125165 1119 ntBASIC25.14■■□□□ 1.62
Col11a1Q61245 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC25.14■■□□□ 1.62
Col11a1Q61245 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Col11a1Q61245 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC25.14■■□□□ 1.61
Col11a1Q61245 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
Col11a1Q61245 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC25.13■■□□□ 1.61
Col11a1Q61245 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
Col11a1Q61245 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Col11a1Q61245 Fezf2-202ENSMUST00000224023 1917 ntBASIC25.13■■□□□ 1.61
Col11a1Q61245 Slc35b2-207ENSMUST00000226086 850 ntBASIC25.12■■□□□ 1.61
Col11a1Q61245 AC122428.3-201ENSMUST00000215551 2290 ntBASIC25.12■■□□□ 1.61
Col11a1Q61245 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Col11a1Q61245 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Col11a1Q61245 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Col11a1Q61245 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Col11a1Q61245 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC25.11■■□□□ 1.61
Col11a1Q61245 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Col11a1Q61245 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC25.11■■□□□ 1.61
Col11a1Q61245 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Col11a1Q61245 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
Col11a1Q61245 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC25.1■■□□□ 1.61
Col11a1Q61245 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Col11a1Q61245 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
Col11a1Q61245 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC25.09■■□□□ 1.61
Col11a1Q61245 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Col11a1Q61245 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Col11a1Q61245 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC25.09■■□□□ 1.61
Col11a1Q61245 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Col11a1Q61245 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC25.09■■□□□ 1.61
Col11a1Q61245 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC25.08■■□□□ 1.61
Col11a1Q61245 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Col11a1Q61245 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC25.08■■□□□ 1.61
Col11a1Q61245 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Col11a1Q61245 Golgb1-201ENSMUST00000023534 498 ntBASIC25.07■■□□□ 1.6
Col11a1Q61245 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Col11a1Q61245 AC117245.4-201ENSMUST00000217388 1646 ntBASIC25.07■■□□□ 1.6
Col11a1Q61245 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Col11a1Q61245 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
Col11a1Q61245 AC153524.1-201ENSMUST00000220436 1935 ntBASIC25.07■■□□□ 1.6
Col11a1Q61245 Gm8093-201ENSMUST00000128935 1892 ntBASIC25.06■■□□□ 1.6
Col11a1Q61245 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC25.06■■□□□ 1.6
Col11a1Q61245 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC25.06■■□□□ 1.6
Col11a1Q61245 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Retrieved 100 of 76,532 protein–RNA pairs in 94.4 ms