Protein–RNA interactions for Protein: P40645

Sox6, Transcription factor SOX-6, mousemouse

Predictions only

Length 827 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox6P40645 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Sox6P40645 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Sox6P40645 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Sox6P40645 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Sox6P40645 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Sox6P40645 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Sox6P40645 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC20.27■□□□□ 0.84
Sox6P40645 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Sox6P40645 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Sox6P40645 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Sox6P40645 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Sox6P40645 Gm26766-202ENSMUST00000227544 2347 ntBASIC20.26■□□□□ 0.83
Sox6P40645 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Sox6P40645 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Sox6P40645 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Sox6P40645 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Sox6P40645 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Sox6P40645 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Sox6P40645 Gm38160-201ENSMUST00000193090 2499 ntBASIC20.25■□□□□ 0.83
Sox6P40645 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Sox6P40645 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sox6P40645 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Sox6P40645 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sox6P40645 Scarna2-201ENSMUST00000157560 414 ntBASIC20.24■□□□□ 0.83
Sox6P40645 Gm9806-201ENSMUST00000051080 552 ntBASIC20.24■□□□□ 0.83
Sox6P40645 Terc-201ENSMUST00000082862 423 ntBASIC20.24■□□□□ 0.83
Sox6P40645 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sox6P40645 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sox6P40645 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Sox6P40645 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Sox6P40645 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC20.23■□□□□ 0.83
Sox6P40645 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Sox6P40645 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Sox6P40645 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Sox6P40645 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Sox6P40645 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Sox6P40645 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Sox6P40645 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Sox6P40645 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Sox6P40645 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC20.22■□□□□ 0.83
Sox6P40645 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Sox6P40645 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Sox6P40645 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Sox6P40645 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
Sox6P40645 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Sox6P40645 Gm11687-201ENSMUST00000118911 886 ntBASIC20.21■□□□□ 0.83
Sox6P40645 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC20.21■□□□□ 0.83
Sox6P40645 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Sox6P40645 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Sox6P40645 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sox6P40645 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sox6P40645 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sox6P40645 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sox6P40645 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC20.2■□□□□ 0.82
Sox6P40645 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sox6P40645 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Sox6P40645 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Sox6P40645 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Sox6P40645 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC20.2■□□□□ 0.82
Sox6P40645 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
Sox6P40645 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Sox6P40645 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC20.19■□□□□ 0.82
Sox6P40645 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Sox6P40645 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Sox6P40645 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Sox6P40645 Gm9910-201ENSMUST00000195385 1550 ntBASIC20.19■□□□□ 0.82
Sox6P40645 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Sox6P40645 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Sox6P40645 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Sox6P40645 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Sox6P40645 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Sox6P40645 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Sox6P40645 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC20.19■□□□□ 0.82
Sox6P40645 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Sox6P40645 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Sox6P40645 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Sox6P40645 Gm16437-201ENSMUST00000025669 507 ntBASIC20.18■□□□□ 0.82
Sox6P40645 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Sox6P40645 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC20.18■□□□□ 0.82
Sox6P40645 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Sox6P40645 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC20.18■□□□□ 0.82
Sox6P40645 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Sox6P40645 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC20.17■□□□□ 0.82
Sox6P40645 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Sox6P40645 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Sox6P40645 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC20.17■□□□□ 0.82
Sox6P40645 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Sox6P40645 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Sox6P40645 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Sox6P40645 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC20.16■□□□□ 0.82
Sox6P40645 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Sox6P40645 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Sox6P40645 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Sox6P40645 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Sox6P40645 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Sox6P40645 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Sox6P40645 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Sox6P40645 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Sox6P40645 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Sox6P40645 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 40.6 ms