Protein–RNA interactions for Protein: A0A075B5Z8

Trav6-1, T cell receptor alpha variable 6-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-1A0A075B5Z8 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trav6-1A0A075B5Z8 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
Trav6-1A0A075B5Z8 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
Trav6-1A0A075B5Z8 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC17.52■□□□□ 0.39
Trav6-1A0A075B5Z8 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trav6-1A0A075B5Z8 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC17.52■□□□□ 0.39
Trav6-1A0A075B5Z8 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trav6-1A0A075B5Z8 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trav6-1A0A075B5Z8 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trav6-1A0A075B5Z8 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trav6-1A0A075B5Z8 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trav6-1A0A075B5Z8 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC17.51■□□□□ 0.39
Trav6-1A0A075B5Z8 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC17.51■□□□□ 0.39
Trav6-1A0A075B5Z8 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trav6-1A0A075B5Z8 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trav6-1A0A075B5Z8 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trav6-1A0A075B5Z8 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trav6-1A0A075B5Z8 Gm12818-201ENSMUST00000117562 1349 ntBASIC17.49■□□□□ 0.39
Trav6-1A0A075B5Z8 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trav6-1A0A075B5Z8 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trav6-1A0A075B5Z8 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC17.49■□□□□ 0.39
Trav6-1A0A075B5Z8 Terc-201ENSMUST00000082862 423 ntBASIC17.49■□□□□ 0.39
Trav6-1A0A075B5Z8 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trav6-1A0A075B5Z8 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trav6-1A0A075B5Z8 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trav6-1A0A075B5Z8 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trav6-1A0A075B5Z8 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trav6-1A0A075B5Z8 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trav6-1A0A075B5Z8 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trav6-1A0A075B5Z8 Gm43006-201ENSMUST00000197702 1602 ntBASIC17.48■□□□□ 0.39
Trav6-1A0A075B5Z8 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC17.48■□□□□ 0.39
Trav6-1A0A075B5Z8 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Trav6-1A0A075B5Z8 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Trav6-1A0A075B5Z8 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trav6-1A0A075B5Z8 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
Trav6-1A0A075B5Z8 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trav6-1A0A075B5Z8 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trav6-1A0A075B5Z8 Mir3960-201ENSMUST00000198213 73 ntBASIC17.47■□□□□ 0.39
Trav6-1A0A075B5Z8 AC154454.1-201ENSMUST00000225253 216 ntBASIC17.47■□□□□ 0.39
Trav6-1A0A075B5Z8 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trav6-1A0A075B5Z8 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC17.47■□□□□ 0.39
Trav6-1A0A075B5Z8 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC17.47■□□□□ 0.39
Trav6-1A0A075B5Z8 Gm37415-201ENSMUST00000192265 2054 ntBASIC17.47■□□□□ 0.39
Trav6-1A0A075B5Z8 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC17.47■□□□□ 0.39
Trav6-1A0A075B5Z8 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC17.47■□□□□ 0.39
Trav6-1A0A075B5Z8 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Trav6-1A0A075B5Z8 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trav6-1A0A075B5Z8 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trav6-1A0A075B5Z8 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
Trav6-1A0A075B5Z8 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trav6-1A0A075B5Z8 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC17.46■□□□□ 0.39
Trav6-1A0A075B5Z8 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC17.46■□□□□ 0.39
Trav6-1A0A075B5Z8 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trav6-1A0A075B5Z8 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.38
Trav6-1A0A075B5Z8 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC17.45■□□□□ 0.38
Trav6-1A0A075B5Z8 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Trav6-1A0A075B5Z8 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Trav6-1A0A075B5Z8 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trav6-1A0A075B5Z8 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Trav6-1A0A075B5Z8 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trav6-1A0A075B5Z8 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trav6-1A0A075B5Z8 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Trav6-1A0A075B5Z8 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Trav6-1A0A075B5Z8 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
Trav6-1A0A075B5Z8 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Trav6-1A0A075B5Z8 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Trav6-1A0A075B5Z8 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Trav6-1A0A075B5Z8 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trav6-1A0A075B5Z8 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Trav6-1A0A075B5Z8 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trav6-1A0A075B5Z8 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trav6-1A0A075B5Z8 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trav6-1A0A075B5Z8 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Trav6-1A0A075B5Z8 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trav6-1A0A075B5Z8 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trav6-1A0A075B5Z8 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trav6-1A0A075B5Z8 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trav6-1A0A075B5Z8 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trav6-1A0A075B5Z8 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trav6-1A0A075B5Z8 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
Trav6-1A0A075B5Z8 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Trav6-1A0A075B5Z8 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trav6-1A0A075B5Z8 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trav6-1A0A075B5Z8 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trav6-1A0A075B5Z8 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Trav6-1A0A075B5Z8 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trav6-1A0A075B5Z8 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trav6-1A0A075B5Z8 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Trav6-1A0A075B5Z8 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trav6-1A0A075B5Z8 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
Trav6-1A0A075B5Z8 Gm8503-201ENSMUST00000118131 455 ntBASIC17.41■□□□□ 0.38
Trav6-1A0A075B5Z8 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC17.41■□□□□ 0.38
Trav6-1A0A075B5Z8 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trav6-1A0A075B5Z8 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trav6-1A0A075B5Z8 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trav6-1A0A075B5Z8 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav6-1A0A075B5Z8 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Trav6-1A0A075B5Z8 AC117245.4-201ENSMUST00000217388 1646 ntBASIC17.4■□□□□ 0.38
Trav6-1A0A075B5Z8 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Trav6-1A0A075B5Z8 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 15 ms