Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Rnf220Q6PDX6 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Rnf220Q6PDX6 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Rnf220Q6PDX6 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Rnf220Q6PDX6 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC20.65■□□□□ 0.9
Rnf220Q6PDX6 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Rnf220Q6PDX6 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Rnf220Q6PDX6 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Rnf220Q6PDX6 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Rnf220Q6PDX6 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Rnf220Q6PDX6 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
Rnf220Q6PDX6 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
Rnf220Q6PDX6 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Rnf220Q6PDX6 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Rnf220Q6PDX6 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Rnf220Q6PDX6 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Rnf220Q6PDX6 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Rnf220Q6PDX6 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Rnf220Q6PDX6 Gm37847-201ENSMUST00000192163 1497 ntBASIC20.63■□□□□ 0.89
Rnf220Q6PDX6 Gm31748-201ENSMUST00000194938 1497 ntBASIC20.63■□□□□ 0.89
Rnf220Q6PDX6 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Rnf220Q6PDX6 Particl-201ENSMUST00000205370 1560 ntBASIC20.63■□□□□ 0.89
Rnf220Q6PDX6 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Rnf220Q6PDX6 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Rnf220Q6PDX6 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Rnf220Q6PDX6 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Rnf220Q6PDX6 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC20.61■□□□□ 0.89
Rnf220Q6PDX6 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Rnf220Q6PDX6 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Rnf220Q6PDX6 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Rnf220Q6PDX6 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Rnf220Q6PDX6 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Rnf220Q6PDX6 Gm37415-201ENSMUST00000192265 2054 ntBASIC20.6■□□□□ 0.89
Rnf220Q6PDX6 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC20.6■□□□□ 0.89
Rnf220Q6PDX6 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Rnf220Q6PDX6 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Rnf220Q6PDX6 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Rnf220Q6PDX6 AC124392.1-201ENSMUST00000225172 5324 ntBASIC20.6■□□□□ 0.89
Rnf220Q6PDX6 Gm12504-201ENSMUST00000120860 2231 ntBASIC20.59■□□□□ 0.89
Rnf220Q6PDX6 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Rnf220Q6PDX6 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Rnf220Q6PDX6 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Rnf220Q6PDX6 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Rnf220Q6PDX6 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Rnf220Q6PDX6 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC20.59■□□□□ 0.89
Rnf220Q6PDX6 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC20.59■□□□□ 0.89
Rnf220Q6PDX6 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
Rnf220Q6PDX6 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC20.58■□□□□ 0.89
Rnf220Q6PDX6 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Rnf220Q6PDX6 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.89
Rnf220Q6PDX6 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Rnf220Q6PDX6 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
Rnf220Q6PDX6 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC20.58■□□□□ 0.88
Rnf220Q6PDX6 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Rnf220Q6PDX6 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
Rnf220Q6PDX6 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Rnf220Q6PDX6 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Rnf220Q6PDX6 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Rnf220Q6PDX6 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Rnf220Q6PDX6 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC20.57■□□□□ 0.88
Rnf220Q6PDX6 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Rnf220Q6PDX6 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Rnf220Q6PDX6 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Rnf220Q6PDX6 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Rnf220Q6PDX6 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Rnf220Q6PDX6 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Rnf220Q6PDX6 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Rnf220Q6PDX6 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Rnf220Q6PDX6 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Rnf220Q6PDX6 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Rnf220Q6PDX6 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Rnf220Q6PDX6 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Rnf220Q6PDX6 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Rnf220Q6PDX6 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Rnf220Q6PDX6 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Rnf220Q6PDX6 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Rnf220Q6PDX6 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Rnf220Q6PDX6 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Rnf220Q6PDX6 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Rnf220Q6PDX6 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
Rnf220Q6PDX6 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Rnf220Q6PDX6 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Rnf220Q6PDX6 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Rnf220Q6PDX6 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Rnf220Q6PDX6 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Rnf220Q6PDX6 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Rnf220Q6PDX6 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Rnf220Q6PDX6 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Rnf220Q6PDX6 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Rnf220Q6PDX6 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.87
Rnf220Q6PDX6 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Rnf220Q6PDX6 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC20.52■□□□□ 0.87
Rnf220Q6PDX6 Gm4430-201ENSMUST00000192413 1943 ntBASIC20.51■□□□□ 0.87
Rnf220Q6PDX6 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rnf220Q6PDX6 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rnf220Q6PDX6 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Rnf220Q6PDX6 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rnf220Q6PDX6 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rnf220Q6PDX6 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rnf220Q6PDX6 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms