Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
Ddb1Q3U1J4 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC28.62■■■□□ 2.17
Ddb1Q3U1J4 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
Ddb1Q3U1J4 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC28.62■■■□□ 2.17
Ddb1Q3U1J4 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC28.61■■■□□ 2.17
Ddb1Q3U1J4 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC28.61■■■□□ 2.17
Ddb1Q3U1J4 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
Ddb1Q3U1J4 Gm40881-201ENSMUST00000223397 166 ntBASIC28.6■■■□□ 2.17
Ddb1Q3U1J4 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC28.6■■■□□ 2.17
Ddb1Q3U1J4 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
Ddb1Q3U1J4 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
Ddb1Q3U1J4 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC28.59■■■□□ 2.17
Ddb1Q3U1J4 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC28.59■■■□□ 2.17
Ddb1Q3U1J4 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC28.59■■■□□ 2.17
Ddb1Q3U1J4 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
Ddb1Q3U1J4 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
Ddb1Q3U1J4 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC28.59■■■□□ 2.17
Ddb1Q3U1J4 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC28.59■■■□□ 2.17
Ddb1Q3U1J4 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
Ddb1Q3U1J4 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC28.58■■■□□ 2.17
Ddb1Q3U1J4 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
Ddb1Q3U1J4 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC28.58■■■□□ 2.16
Ddb1Q3U1J4 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Ddb1Q3U1J4 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
Ddb1Q3U1J4 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC28.56■■■□□ 2.16
Ddb1Q3U1J4 Gm5297-201ENSMUST00000198555 1171 ntBASIC28.56■■■□□ 2.16
Ddb1Q3U1J4 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
Ddb1Q3U1J4 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
Ddb1Q3U1J4 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC28.55■■■□□ 2.16
Ddb1Q3U1J4 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
Ddb1Q3U1J4 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
Ddb1Q3U1J4 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC28.54■■■□□ 2.16
Ddb1Q3U1J4 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC28.54■■■□□ 2.16
Ddb1Q3U1J4 Appbp2os-202ENSMUST00000206972 447 ntBASIC28.54■■■□□ 2.16
Ddb1Q3U1J4 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
Ddb1Q3U1J4 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
Ddb1Q3U1J4 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC28.53■■■□□ 2.16
Ddb1Q3U1J4 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
Ddb1Q3U1J4 Gm28536-201ENSMUST00000190971 1317 ntBASIC28.53■■■□□ 2.16
Ddb1Q3U1J4 Gm12922-201ENSMUST00000120626 809 ntBASIC28.53■■■□□ 2.16
Ddb1Q3U1J4 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC28.53■■■□□ 2.16
Ddb1Q3U1J4 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
Ddb1Q3U1J4 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
Ddb1Q3U1J4 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC28.52■■■□□ 2.16
Ddb1Q3U1J4 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC28.52■■■□□ 2.16
Ddb1Q3U1J4 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
Ddb1Q3U1J4 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
Ddb1Q3U1J4 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
Ddb1Q3U1J4 AC140930.3-201ENSMUST00000222935 274 ntBASIC28.51■■■□□ 2.15
Ddb1Q3U1J4 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
Ddb1Q3U1J4 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
Ddb1Q3U1J4 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC28.5■■■□□ 2.15
Ddb1Q3U1J4 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC28.5■■■□□ 2.15
Ddb1Q3U1J4 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC28.5■■■□□ 2.15
Ddb1Q3U1J4 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC28.5■■■□□ 2.15
Ddb1Q3U1J4 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
Ddb1Q3U1J4 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
Ddb1Q3U1J4 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC28.49■■■□□ 2.15
Ddb1Q3U1J4 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
Ddb1Q3U1J4 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC28.48■■■□□ 2.15
Ddb1Q3U1J4 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC28.48■■■□□ 2.15
Ddb1Q3U1J4 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
Ddb1Q3U1J4 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC28.48■■■□□ 2.15
Ddb1Q3U1J4 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC28.48■■■□□ 2.15
Ddb1Q3U1J4 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
Ddb1Q3U1J4 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC28.47■■■□□ 2.15
Ddb1Q3U1J4 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
Ddb1Q3U1J4 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC28.46■■■□□ 2.15
Ddb1Q3U1J4 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC28.46■■■□□ 2.15
Ddb1Q3U1J4 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC28.46■■■□□ 2.15
Ddb1Q3U1J4 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
Ddb1Q3U1J4 Gm12821-201ENSMUST00000120022 600 ntBASIC28.45■■■□□ 2.14
Ddb1Q3U1J4 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC28.45■■■□□ 2.14
Ddb1Q3U1J4 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
Ddb1Q3U1J4 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC28.45■■■□□ 2.14
Ddb1Q3U1J4 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC28.44■■■□□ 2.14
Ddb1Q3U1J4 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
Ddb1Q3U1J4 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
Ddb1Q3U1J4 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
Ddb1Q3U1J4 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC28.42■■■□□ 2.14
Ddb1Q3U1J4 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
Ddb1Q3U1J4 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC28.42■■■□□ 2.14
Ddb1Q3U1J4 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
Ddb1Q3U1J4 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC28.41■■■□□ 2.14
Ddb1Q3U1J4 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
Ddb1Q3U1J4 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
Ddb1Q3U1J4 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
Ddb1Q3U1J4 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC28.4■■■□□ 2.14
Ddb1Q3U1J4 Gm27454-201ENSMUST00000185090 204 ntBASIC28.4■■■□□ 2.14
Ddb1Q3U1J4 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC28.4■■■□□ 2.14
Ddb1Q3U1J4 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC28.4■■■□□ 2.14
Ddb1Q3U1J4 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
Ddb1Q3U1J4 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC28.39■■■□□ 2.14
Ddb1Q3U1J4 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
Ddb1Q3U1J4 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC28.39■■■□□ 2.13
Ddb1Q3U1J4 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Ddb1Q3U1J4 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Ddb1Q3U1J4 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
Ddb1Q3U1J4 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Ddb1Q3U1J4 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Retrieved 100 of 76,532 protein–RNA pairs in 98.1 ms