Protein–RNA interactions for Protein: P59708

Sf3b6, Splicing factor 3B subunit 6, mousemouse

Known RBP Predictions only

Length 125 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b6P59708 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Sf3b6P59708 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Sf3b6P59708 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Sf3b6P59708 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC19.48■□□□□ 0.71
Sf3b6P59708 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC19.48■□□□□ 0.71
Sf3b6P59708 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Sf3b6P59708 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Sf3b6P59708 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Sf3b6P59708 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Sf3b6P59708 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Sf3b6P59708 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Sf3b6P59708 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Sf3b6P59708 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Sf3b6P59708 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Sf3b6P59708 Gm43006-201ENSMUST00000197702 1602 ntBASIC19.47■□□□□ 0.71
Sf3b6P59708 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC19.46■□□□□ 0.71
Sf3b6P59708 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Sf3b6P59708 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC19.46■□□□□ 0.71
Sf3b6P59708 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC19.46■□□□□ 0.71
Sf3b6P59708 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Sf3b6P59708 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Sf3b6P59708 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Sf3b6P59708 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Sf3b6P59708 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Sf3b6P59708 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Sf3b6P59708 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Sf3b6P59708 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Sf3b6P59708 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
Sf3b6P59708 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Sf3b6P59708 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Sf3b6P59708 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Sf3b6P59708 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Sf3b6P59708 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Sf3b6P59708 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC19.43■□□□□ 0.7
Sf3b6P59708 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Sf3b6P59708 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Sf3b6P59708 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
Sf3b6P59708 Gm22567-201ENSMUST00000175542 342 ntBASIC19.42■□□□□ 0.7
Sf3b6P59708 Gm12504-201ENSMUST00000120860 2231 ntBASIC19.41■□□□□ 0.7
Sf3b6P59708 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC19.41■□□□□ 0.7
Sf3b6P59708 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Sf3b6P59708 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Sf3b6P59708 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Sf3b6P59708 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Sf3b6P59708 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Sf3b6P59708 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Sf3b6P59708 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Sf3b6P59708 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Sf3b6P59708 Gm37415-201ENSMUST00000192265 2054 ntBASIC19.4■□□□□ 0.7
Sf3b6P59708 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Sf3b6P59708 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Sf3b6P59708 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Sf3b6P59708 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC19.39■□□□□ 0.69
Sf3b6P59708 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Sf3b6P59708 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Sf3b6P59708 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Sf3b6P59708 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Sf3b6P59708 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Sf3b6P59708 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Sf3b6P59708 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Sf3b6P59708 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC19.38■□□□□ 0.69
Sf3b6P59708 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Sf3b6P59708 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Sf3b6P59708 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Sf3b6P59708 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC19.37■□□□□ 0.69
Sf3b6P59708 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Sf3b6P59708 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Sf3b6P59708 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Sf3b6P59708 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Sf3b6P59708 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Sf3b6P59708 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Sf3b6P59708 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
Sf3b6P59708 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Sf3b6P59708 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Sf3b6P59708 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC19.35■□□□□ 0.69
Sf3b6P59708 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC19.35■□□□□ 0.69
Sf3b6P59708 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Sf3b6P59708 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Sf3b6P59708 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Sf3b6P59708 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Sf3b6P59708 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Sf3b6P59708 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Sf3b6P59708 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Sf3b6P59708 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Sf3b6P59708 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Sf3b6P59708 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Sf3b6P59708 Notumos-201ENSMUST00000151998 2659 ntBASIC19.34■□□□□ 0.69
Sf3b6P59708 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Sf3b6P59708 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC19.33■□□□□ 0.68
Sf3b6P59708 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Sf3b6P59708 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Sf3b6P59708 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Sf3b6P59708 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Sf3b6P59708 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Sf3b6P59708 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC19.32■□□□□ 0.68
Sf3b6P59708 Gm7432-201ENSMUST00000210343 879 ntBASIC19.32■□□□□ 0.68
Sf3b6P59708 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC19.32■□□□□ 0.68
Sf3b6P59708 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Sf3b6P59708 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Sf3b6P59708 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 13.2 ms