Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC21.16■□□□□ 0.98
Cdx2P43241 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cdx2P43241 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cdx2P43241 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cdx2P43241 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Cdx2P43241 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC21.15■□□□□ 0.98
Cdx2P43241 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC21.15■□□□□ 0.98
Cdx2P43241 Gm7417-201ENSMUST00000192950 473 ntBASIC21.15■□□□□ 0.98
Cdx2P43241 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Cdx2P43241 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cdx2P43241 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Cdx2P43241 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
Cdx2P43241 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cdx2P43241 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC21.14■□□□□ 0.97
Cdx2P43241 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cdx2P43241 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cdx2P43241 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Cdx2P43241 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cdx2P43241 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cdx2P43241 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Cdx2P43241 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cdx2P43241 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Cdx2P43241 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Cdx2P43241 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Cdx2P43241 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC21.11■□□□□ 0.97
Cdx2P43241 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC21.11■□□□□ 0.97
Cdx2P43241 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Cdx2P43241 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Cdx2P43241 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Cdx2P43241 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cdx2P43241 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cdx2P43241 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC21.1■□□□□ 0.97
Cdx2P43241 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Cdx2P43241 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cdx2P43241 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC21.09■□□□□ 0.97
Cdx2P43241 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cdx2P43241 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.97
Cdx2P43241 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
Cdx2P43241 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
Cdx2P43241 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Cdx2P43241 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Cdx2P43241 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Cdx2P43241 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cdx2P43241 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cdx2P43241 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cdx2P43241 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Cdx2P43241 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Cdx2P43241 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Cdx2P43241 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Cdx2P43241 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cdx2P43241 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC21.07■□□□□ 0.96
Cdx2P43241 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cdx2P43241 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cdx2P43241 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cdx2P43241 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
Cdx2P43241 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Cdx2P43241 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cdx2P43241 Gm28536-201ENSMUST00000190971 1317 ntBASIC21.04■□□□□ 0.96
Cdx2P43241 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cdx2P43241 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cdx2P43241 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cdx2P43241 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cdx2P43241 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Cdx2P43241 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Cdx2P43241 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC21.03■□□□□ 0.96
Cdx2P43241 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cdx2P43241 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Cdx2P43241 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC21.03■□□□□ 0.96
Cdx2P43241 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC21.03■□□□□ 0.96
Cdx2P43241 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cdx2P43241 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cdx2P43241 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Cdx2P43241 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Cdx2P43241 Gm13241-201ENSMUST00000094493 780 ntBASIC21.02■□□□□ 0.96
Cdx2P43241 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cdx2P43241 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC21.01■□□□□ 0.95
Cdx2P43241 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
Cdx2P43241 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC21.01■□□□□ 0.95
Cdx2P43241 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Cdx2P43241 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cdx2P43241 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC21■□□□□ 0.95
Cdx2P43241 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC21■□□□□ 0.95
Cdx2P43241 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC21■□□□□ 0.95
Cdx2P43241 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cdx2P43241 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cdx2P43241 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cdx2P43241 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC21■□□□□ 0.95
Cdx2P43241 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
Cdx2P43241 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cdx2P43241 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC20.99■□□□□ 0.95
Cdx2P43241 Gm43034-201ENSMUST00000198678 1364 ntBASIC20.99■□□□□ 0.95
Cdx2P43241 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cdx2P43241 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cdx2P43241 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cdx2P43241 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
Cdx2P43241 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Cdx2P43241 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC20.99■□□□□ 0.95
Cdx2P43241 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC20.99■□□□□ 0.95
Cdx2P43241 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cdx2P43241 AC153524.1-201ENSMUST00000220436 1935 ntBASIC20.99■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 141.3 ms