Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Col1a1P11087 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Col1a1P11087 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Col1a1P11087 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Col1a1P11087 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC26.35■■□□□ 1.81
Col1a1P11087 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Col1a1P11087 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC26.34■■□□□ 1.81
Col1a1P11087 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Col1a1P11087 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC26.32■■□□□ 1.8
Col1a1P11087 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Col1a1P11087 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
Col1a1P11087 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC26.31■■□□□ 1.8
Col1a1P11087 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Col1a1P11087 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC26.31■■□□□ 1.8
Col1a1P11087 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
Col1a1P11087 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Col1a1P11087 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Col1a1P11087 AC122428.3-201ENSMUST00000215551 2290 ntBASIC26.31■■□□□ 1.8
Col1a1P11087 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Col1a1P11087 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Col1a1P11087 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Col1a1P11087 Gm43034-201ENSMUST00000198678 1364 ntBASIC26.3■■□□□ 1.8
Col1a1P11087 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Col1a1P11087 Gm22238-201ENSMUST00000175222 88 ntBASIC26.3■■□□□ 1.8
Col1a1P11087 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC26.3■■□□□ 1.8
Col1a1P11087 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Col1a1P11087 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC26.29■■□□□ 1.8
Col1a1P11087 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Col1a1P11087 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
Col1a1P11087 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Col1a1P11087 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Col1a1P11087 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Col1a1P11087 Gm21956-201ENSMUST00000179946 522 ntBASIC26.28■■□□□ 1.8
Col1a1P11087 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
Col1a1P11087 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Col1a1P11087 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Col1a1P11087 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
Col1a1P11087 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC26.27■■□□□ 1.8
Col1a1P11087 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
Col1a1P11087 Gm9847-201ENSMUST00000052528 599 ntBASIC26.27■■□□□ 1.8
Col1a1P11087 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Col1a1P11087 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Col1a1P11087 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
Col1a1P11087 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
Col1a1P11087 Gm40881-201ENSMUST00000223397 166 ntBASIC26.26■■□□□ 1.79
Col1a1P11087 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Col1a1P11087 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Col1a1P11087 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC26.25■■□□□ 1.79
Col1a1P11087 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Col1a1P11087 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Col1a1P11087 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC26.24■■□□□ 1.79
Col1a1P11087 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC26.24■■□□□ 1.79
Col1a1P11087 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Col1a1P11087 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Col1a1P11087 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Col1a1P11087 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Col1a1P11087 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Col1a1P11087 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC26.23■■□□□ 1.79
Col1a1P11087 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC26.23■■□□□ 1.79
Col1a1P11087 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC26.22■■□□□ 1.79
Col1a1P11087 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Col1a1P11087 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Col1a1P11087 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Col1a1P11087 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC26.22■■□□□ 1.79
Col1a1P11087 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Col1a1P11087 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Col1a1P11087 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
Col1a1P11087 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
Col1a1P11087 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
Col1a1P11087 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Col1a1P11087 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Col1a1P11087 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC26.21■■□□□ 1.79
Col1a1P11087 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC26.21■■□□□ 1.79
Col1a1P11087 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Col1a1P11087 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
Col1a1P11087 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Col1a1P11087 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.78
Col1a1P11087 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Col1a1P11087 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
Col1a1P11087 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Col1a1P11087 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Col1a1P11087 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Col1a1P11087 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
Col1a1P11087 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
Col1a1P11087 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
Col1a1P11087 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Col1a1P11087 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC26.18■■□□□ 1.78
Col1a1P11087 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Col1a1P11087 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Col1a1P11087 Gm28536-201ENSMUST00000190971 1317 ntBASIC26.18■■□□□ 1.78
Col1a1P11087 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC26.17■■□□□ 1.78
Col1a1P11087 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Col1a1P11087 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Col1a1P11087 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC26.17■■□□□ 1.78
Col1a1P11087 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Col1a1P11087 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Col1a1P11087 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC26.16■■□□□ 1.78
Col1a1P11087 Gm12922-201ENSMUST00000120626 809 ntBASIC26.16■■□□□ 1.78
Col1a1P11087 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC26.16■■□□□ 1.78
Col1a1P11087 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Retrieved 100 of 76,532 protein–RNA pairs in 57.3 ms