Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Cdc40Q9DC48 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC20.42■□□□□ 0.86
Cdc40Q9DC48 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Cdc40Q9DC48 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Cdc40Q9DC48 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC20.41■□□□□ 0.86
Cdc40Q9DC48 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC20.41■□□□□ 0.86
Cdc40Q9DC48 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Cdc40Q9DC48 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC20.41■□□□□ 0.86
Cdc40Q9DC48 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cdc40Q9DC48 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cdc40Q9DC48 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Cdc40Q9DC48 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Cdc40Q9DC48 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Cdc40Q9DC48 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Cdc40Q9DC48 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Cdc40Q9DC48 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC20.39■□□□□ 0.86
Cdc40Q9DC48 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC20.39■□□□□ 0.86
Cdc40Q9DC48 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Cdc40Q9DC48 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Cdc40Q9DC48 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Cdc40Q9DC48 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Cdc40Q9DC48 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Cdc40Q9DC48 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Cdc40Q9DC48 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Cdc40Q9DC48 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Cdc40Q9DC48 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Cdc40Q9DC48 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Cdc40Q9DC48 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
Cdc40Q9DC48 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Cdc40Q9DC48 Gm10420-201ENSMUST00000121713 882 ntBASIC20.37■□□□□ 0.85
Cdc40Q9DC48 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Cdc40Q9DC48 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Cdc40Q9DC48 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Cdc40Q9DC48 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Cdc40Q9DC48 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cdc40Q9DC48 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Cdc40Q9DC48 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cdc40Q9DC48 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cdc40Q9DC48 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Cdc40Q9DC48 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Cdc40Q9DC48 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Cdc40Q9DC48 Il17rd-202ENSMUST00000223942 2186 ntBASIC20.35■□□□□ 0.85
Cdc40Q9DC48 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Cdc40Q9DC48 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Cdc40Q9DC48 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Cdc40Q9DC48 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Cdc40Q9DC48 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Cdc40Q9DC48 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Cdc40Q9DC48 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Cdc40Q9DC48 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Cdc40Q9DC48 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Cdc40Q9DC48 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Cdc40Q9DC48 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Cdc40Q9DC48 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Cdc40Q9DC48 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC20.33■□□□□ 0.85
Cdc40Q9DC48 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Cdc40Q9DC48 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Cdc40Q9DC48 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC20.33■□□□□ 0.84
Cdc40Q9DC48 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Cdc40Q9DC48 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Cdc40Q9DC48 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Cdc40Q9DC48 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Cdc40Q9DC48 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Cdc40Q9DC48 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Cdc40Q9DC48 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Cdc40Q9DC48 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Cdc40Q9DC48 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Cdc40Q9DC48 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Cdc40Q9DC48 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC20.3■□□□□ 0.84
Cdc40Q9DC48 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Cdc40Q9DC48 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC20.29■□□□□ 0.84
Cdc40Q9DC48 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Cdc40Q9DC48 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC20.29■□□□□ 0.84
Cdc40Q9DC48 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Cdc40Q9DC48 Gm44428-201ENSMUST00000204474 874 ntBASIC20.28■□□□□ 0.84
Cdc40Q9DC48 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Cdc40Q9DC48 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Cdc40Q9DC48 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Cdc40Q9DC48 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Cdc40Q9DC48 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Cdc40Q9DC48 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Cdc40Q9DC48 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Cdc40Q9DC48 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC20.27■□□□□ 0.83
Cdc40Q9DC48 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Cdc40Q9DC48 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
Cdc40Q9DC48 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Cdc40Q9DC48 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Cdc40Q9DC48 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Cdc40Q9DC48 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Cdc40Q9DC48 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Cdc40Q9DC48 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Cdc40Q9DC48 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Cdc40Q9DC48 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cdc40Q9DC48 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC20.24■□□□□ 0.83
Cdc40Q9DC48 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC20.24■□□□□ 0.83
Cdc40Q9DC48 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC20.24■□□□□ 0.83
Cdc40Q9DC48 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cdc40Q9DC48 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cdc40Q9DC48 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cdc40Q9DC48 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 14.2 ms