Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Use1Q9CQ56 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Use1Q9CQ56 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Use1Q9CQ56 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Use1Q9CQ56 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Use1Q9CQ56 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC20.78■□□□□ 0.92
Use1Q9CQ56 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Use1Q9CQ56 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Use1Q9CQ56 Gm9812-201ENSMUST00000061934 968 ntBASIC20.78■□□□□ 0.92
Use1Q9CQ56 AC164433.2-201ENSMUST00000226346 1701 ntBASIC20.78■□□□□ 0.92
Use1Q9CQ56 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Use1Q9CQ56 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Use1Q9CQ56 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Use1Q9CQ56 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC20.77■□□□□ 0.92
Use1Q9CQ56 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
Use1Q9CQ56 AC153911.1-201ENSMUST00000220378 758 ntBASIC20.77■□□□□ 0.92
Use1Q9CQ56 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Use1Q9CQ56 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Use1Q9CQ56 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Use1Q9CQ56 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Use1Q9CQ56 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Use1Q9CQ56 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
Use1Q9CQ56 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Use1Q9CQ56 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Use1Q9CQ56 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Use1Q9CQ56 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Use1Q9CQ56 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC20.76■□□□□ 0.91
Use1Q9CQ56 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Use1Q9CQ56 Mir3960-201ENSMUST00000198213 73 ntBASIC20.76■□□□□ 0.91
Use1Q9CQ56 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC20.76■□□□□ 0.91
Use1Q9CQ56 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Use1Q9CQ56 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Use1Q9CQ56 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Use1Q9CQ56 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Use1Q9CQ56 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Use1Q9CQ56 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC20.75■□□□□ 0.91
Use1Q9CQ56 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Use1Q9CQ56 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Use1Q9CQ56 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Use1Q9CQ56 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
Use1Q9CQ56 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC20.74■□□□□ 0.91
Use1Q9CQ56 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC20.74■□□□□ 0.91
Use1Q9CQ56 Gm7432-201ENSMUST00000210343 879 ntBASIC20.74■□□□□ 0.91
Use1Q9CQ56 AC122317.2-201ENSMUST00000218708 1248 ntBASIC20.74■□□□□ 0.91
Use1Q9CQ56 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Use1Q9CQ56 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Use1Q9CQ56 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Use1Q9CQ56 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Use1Q9CQ56 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Use1Q9CQ56 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Use1Q9CQ56 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Use1Q9CQ56 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Use1Q9CQ56 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Use1Q9CQ56 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Use1Q9CQ56 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
Use1Q9CQ56 AC154454.1-201ENSMUST00000225253 216 ntBASIC20.73■□□□□ 0.91
Use1Q9CQ56 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Use1Q9CQ56 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Use1Q9CQ56 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Use1Q9CQ56 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Use1Q9CQ56 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Use1Q9CQ56 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Use1Q9CQ56 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC20.72■□□□□ 0.91
Use1Q9CQ56 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Use1Q9CQ56 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC20.72■□□□□ 0.91
Use1Q9CQ56 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Use1Q9CQ56 Gm12818-201ENSMUST00000117562 1349 ntBASIC20.72■□□□□ 0.91
Use1Q9CQ56 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Use1Q9CQ56 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Use1Q9CQ56 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Use1Q9CQ56 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Use1Q9CQ56 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Use1Q9CQ56 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Use1Q9CQ56 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Use1Q9CQ56 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Use1Q9CQ56 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Use1Q9CQ56 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Use1Q9CQ56 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Use1Q9CQ56 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC20.7■□□□□ 0.9
Use1Q9CQ56 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Use1Q9CQ56 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC20.7■□□□□ 0.9
Use1Q9CQ56 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Use1Q9CQ56 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Use1Q9CQ56 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
Use1Q9CQ56 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Use1Q9CQ56 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Use1Q9CQ56 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Use1Q9CQ56 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Use1Q9CQ56 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Use1Q9CQ56 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Use1Q9CQ56 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Use1Q9CQ56 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Use1Q9CQ56 Gm11599-201ENSMUST00000118720 878 ntBASIC20.68■□□□□ 0.9
Use1Q9CQ56 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Use1Q9CQ56 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC20.67■□□□□ 0.9
Use1Q9CQ56 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Use1Q9CQ56 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC20.67■□□□□ 0.9
Use1Q9CQ56 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC20.67■□□□□ 0.9
Use1Q9CQ56 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Use1Q9CQ56 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms