Protein–RNA interactions for Protein: Q5R1I0

Trav6d-4, T cell receptor alpha variable 6D-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-4Q5R1I0 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trav6d-4Q5R1I0 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav6d-4Q5R1I0 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Trav6d-4Q5R1I0 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Trav6d-4Q5R1I0 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav6d-4Q5R1I0 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Trav6d-4Q5R1I0 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Trav6d-4Q5R1I0 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav6d-4Q5R1I0 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav6d-4Q5R1I0 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav6d-4Q5R1I0 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trav6d-4Q5R1I0 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trav6d-4Q5R1I0 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav6d-4Q5R1I0 Gm43592-201ENSMUST00000196922 1165 ntBASIC18.61■□□□□ 0.57
Trav6d-4Q5R1I0 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Trav6d-4Q5R1I0 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Trav6d-4Q5R1I0 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav6d-4Q5R1I0 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav6d-4Q5R1I0 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav6d-4Q5R1I0 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC18.6■□□□□ 0.57
Trav6d-4Q5R1I0 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav6d-4Q5R1I0 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav6d-4Q5R1I0 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav6d-4Q5R1I0 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC18.59■□□□□ 0.57
Trav6d-4Q5R1I0 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav6d-4Q5R1I0 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav6d-4Q5R1I0 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav6d-4Q5R1I0 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trav6d-4Q5R1I0 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.57
Trav6d-4Q5R1I0 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trav6d-4Q5R1I0 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trav6d-4Q5R1I0 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trav6d-4Q5R1I0 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trav6d-4Q5R1I0 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trav6d-4Q5R1I0 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Trav6d-4Q5R1I0 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trav6d-4Q5R1I0 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC18.58■□□□□ 0.56
Trav6d-4Q5R1I0 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trav6d-4Q5R1I0 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trav6d-4Q5R1I0 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav6d-4Q5R1I0 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav6d-4Q5R1I0 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trav6d-4Q5R1I0 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC18.57■□□□□ 0.56
Trav6d-4Q5R1I0 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav6d-4Q5R1I0 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav6d-4Q5R1I0 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trav6d-4Q5R1I0 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC18.56■□□□□ 0.56
Trav6d-4Q5R1I0 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC18.56■□□□□ 0.56
Trav6d-4Q5R1I0 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav6d-4Q5R1I0 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trav6d-4Q5R1I0 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trav6d-4Q5R1I0 Gm5921-201ENSMUST00000075898 882 ntBASIC18.55■□□□□ 0.56
Trav6d-4Q5R1I0 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav6d-4Q5R1I0 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Trav6d-4Q5R1I0 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav6d-4Q5R1I0 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trav6d-4Q5R1I0 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav6d-4Q5R1I0 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC18.54■□□□□ 0.56
Trav6d-4Q5R1I0 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC18.54■□□□□ 0.56
Trav6d-4Q5R1I0 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Trav6d-4Q5R1I0 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC18.53■□□□□ 0.56
Trav6d-4Q5R1I0 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav6d-4Q5R1I0 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trav6d-4Q5R1I0 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav6d-4Q5R1I0 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Trav6d-4Q5R1I0 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav6d-4Q5R1I0 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav6d-4Q5R1I0 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav6d-4Q5R1I0 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
Trav6d-4Q5R1I0 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Trav6d-4Q5R1I0 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav6d-4Q5R1I0 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav6d-4Q5R1I0 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trav6d-4Q5R1I0 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trav6d-4Q5R1I0 AC153524.1-201ENSMUST00000220436 1935 ntBASIC18.51■□□□□ 0.55
Trav6d-4Q5R1I0 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Trav6d-4Q5R1I0 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Trav6d-4Q5R1I0 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Trav6d-4Q5R1I0 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav6d-4Q5R1I0 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC18.5■□□□□ 0.55
Trav6d-4Q5R1I0 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC18.5■□□□□ 0.55
Trav6d-4Q5R1I0 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav6d-4Q5R1I0 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav6d-4Q5R1I0 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav6d-4Q5R1I0 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trav6d-4Q5R1I0 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trav6d-4Q5R1I0 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav6d-4Q5R1I0 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav6d-4Q5R1I0 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav6d-4Q5R1I0 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav6d-4Q5R1I0 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Trav6d-4Q5R1I0 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav6d-4Q5R1I0 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav6d-4Q5R1I0 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav6d-4Q5R1I0 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav6d-4Q5R1I0 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav6d-4Q5R1I0 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Trav6d-4Q5R1I0 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC18.47■□□□□ 0.55
Trav6d-4Q5R1I0 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav6d-4Q5R1I0 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 255.7 ms