Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Trav6-3Q5R1E6 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trav6-3Q5R1E6 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trav6-3Q5R1E6 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trav6-3Q5R1E6 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trav6-3Q5R1E6 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Trav6-3Q5R1E6 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC17.75■□□□□ 0.43
Trav6-3Q5R1E6 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trav6-3Q5R1E6 Terc-201ENSMUST00000082862 423 ntBASIC17.75■□□□□ 0.43
Trav6-3Q5R1E6 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trav6-3Q5R1E6 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trav6-3Q5R1E6 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Trav6-3Q5R1E6 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trav6-3Q5R1E6 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trav6-3Q5R1E6 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trav6-3Q5R1E6 Gm45364-201ENSMUST00000210883 159 ntBASIC17.74■□□□□ 0.43
Trav6-3Q5R1E6 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trav6-3Q5R1E6 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trav6-3Q5R1E6 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trav6-3Q5R1E6 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trav6-3Q5R1E6 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trav6-3Q5R1E6 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trav6-3Q5R1E6 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Trav6-3Q5R1E6 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trav6-3Q5R1E6 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trav6-3Q5R1E6 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trav6-3Q5R1E6 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trav6-3Q5R1E6 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trav6-3Q5R1E6 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Trav6-3Q5R1E6 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
Trav6-3Q5R1E6 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trav6-3Q5R1E6 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trav6-3Q5R1E6 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Trav6-3Q5R1E6 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trav6-3Q5R1E6 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trav6-3Q5R1E6 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trav6-3Q5R1E6 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trav6-3Q5R1E6 Gm7199-201ENSMUST00000118327 1485 ntBASIC17.72■□□□□ 0.43
Trav6-3Q5R1E6 Gm11599-201ENSMUST00000118720 878 ntBASIC17.72■□□□□ 0.43
Trav6-3Q5R1E6 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trav6-3Q5R1E6 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trav6-3Q5R1E6 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trav6-3Q5R1E6 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trav6-3Q5R1E6 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Trav6-3Q5R1E6 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC17.71■□□□□ 0.43
Trav6-3Q5R1E6 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trav6-3Q5R1E6 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Trav6-3Q5R1E6 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trav6-3Q5R1E6 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC17.71■□□□□ 0.43
Trav6-3Q5R1E6 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trav6-3Q5R1E6 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trav6-3Q5R1E6 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC17.7■□□□□ 0.42
Trav6-3Q5R1E6 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trav6-3Q5R1E6 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trav6-3Q5R1E6 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trav6-3Q5R1E6 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trav6-3Q5R1E6 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trav6-3Q5R1E6 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trav6-3Q5R1E6 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trav6-3Q5R1E6 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trav6-3Q5R1E6 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Trav6-3Q5R1E6 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Trav6-3Q5R1E6 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trav6-3Q5R1E6 Gm22567-201ENSMUST00000175542 342 ntBASIC17.69■□□□□ 0.42
Trav6-3Q5R1E6 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Trav6-3Q5R1E6 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trav6-3Q5R1E6 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trav6-3Q5R1E6 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC17.68■□□□□ 0.42
Trav6-3Q5R1E6 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trav6-3Q5R1E6 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trav6-3Q5R1E6 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trav6-3Q5R1E6 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Trav6-3Q5R1E6 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trav6-3Q5R1E6 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC17.67■□□□□ 0.42
Trav6-3Q5R1E6 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
Trav6-3Q5R1E6 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trav6-3Q5R1E6 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Trav6-3Q5R1E6 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trav6-3Q5R1E6 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trav6-3Q5R1E6 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Trav6-3Q5R1E6 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trav6-3Q5R1E6 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trav6-3Q5R1E6 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
Trav6-3Q5R1E6 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trav6-3Q5R1E6 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav6-3Q5R1E6 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav6-3Q5R1E6 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav6-3Q5R1E6 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Trav6-3Q5R1E6 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Trav6-3Q5R1E6 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav6-3Q5R1E6 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav6-3Q5R1E6 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav6-3Q5R1E6 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav6-3Q5R1E6 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Trav6-3Q5R1E6 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Trav6-3Q5R1E6 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav6-3Q5R1E6 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Trav6-3Q5R1E6 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Trav6-3Q5R1E6 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trav6-3Q5R1E6 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 161.8 ms