Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Pcdha4O88689 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC24.84■■□□□ 1.57
Pcdha4O88689 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Pcdha4O88689 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC24.84■■□□□ 1.57
Pcdha4O88689 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
Pcdha4O88689 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC24.83■■□□□ 1.57
Pcdha4O88689 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
Pcdha4O88689 Gm10420-201ENSMUST00000121713 882 ntBASIC24.83■■□□□ 1.57
Pcdha4O88689 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Pcdha4O88689 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Pcdha4O88689 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
Pcdha4O88689 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Pcdha4O88689 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
Pcdha4O88689 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Pcdha4O88689 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
Pcdha4O88689 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC24.81■■□□□ 1.56
Pcdha4O88689 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
Pcdha4O88689 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Pcdha4O88689 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
Pcdha4O88689 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC24.81■■□□□ 1.56
Pcdha4O88689 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC24.81■■□□□ 1.56
Pcdha4O88689 Il17rd-202ENSMUST00000223942 2186 ntBASIC24.8■■□□□ 1.56
Pcdha4O88689 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC24.8■■□□□ 1.56
Pcdha4O88689 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC24.8■■□□□ 1.56
Pcdha4O88689 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
Pcdha4O88689 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
Pcdha4O88689 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
Pcdha4O88689 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC24.79■■□□□ 1.56
Pcdha4O88689 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC24.79■■□□□ 1.56
Pcdha4O88689 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Pcdha4O88689 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Pcdha4O88689 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC24.78■■□□□ 1.56
Pcdha4O88689 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC24.78■■□□□ 1.56
Pcdha4O88689 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Pcdha4O88689 AC153524.1-201ENSMUST00000220436 1935 ntBASIC24.77■■□□□ 1.56
Pcdha4O88689 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
Pcdha4O88689 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Pcdha4O88689 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
Pcdha4O88689 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Pcdha4O88689 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC24.76■■□□□ 1.55
Pcdha4O88689 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC24.76■■□□□ 1.55
Pcdha4O88689 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Pcdha4O88689 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC24.75■■□□□ 1.55
Pcdha4O88689 Gm28731-201ENSMUST00000185564 1569 ntBASIC24.75■■□□□ 1.55
Pcdha4O88689 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Pcdha4O88689 Gm5067-201ENSMUST00000170449 1009 ntBASIC24.74■■□□□ 1.55
Pcdha4O88689 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC24.74■■□□□ 1.55
Pcdha4O88689 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Pcdha4O88689 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Pcdha4O88689 Gm6934-201ENSMUST00000194780 1905 ntBASIC24.74■■□□□ 1.55
Pcdha4O88689 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Pcdha4O88689 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
Pcdha4O88689 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
Pcdha4O88689 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
Pcdha4O88689 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Pcdha4O88689 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Pcdha4O88689 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
Pcdha4O88689 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Pcdha4O88689 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Pcdha4O88689 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC24.72■■□□□ 1.55
Pcdha4O88689 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC24.72■■□□□ 1.55
Pcdha4O88689 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
Pcdha4O88689 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Pcdha4O88689 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC24.71■■□□□ 1.55
Pcdha4O88689 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Pcdha4O88689 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC24.71■■□□□ 1.55
Pcdha4O88689 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC24.71■■□□□ 1.55
Pcdha4O88689 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
Pcdha4O88689 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
Pcdha4O88689 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC24.7■■□□□ 1.54
Pcdha4O88689 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC24.7■■□□□ 1.54
Pcdha4O88689 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC24.7■■□□□ 1.54
Pcdha4O88689 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Pcdha4O88689 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
Pcdha4O88689 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC24.69■■□□□ 1.54
Pcdha4O88689 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
Pcdha4O88689 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC24.68■■□□□ 1.54
Pcdha4O88689 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Pcdha4O88689 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Pcdha4O88689 Gm43592-201ENSMUST00000196922 1165 ntBASIC24.68■■□□□ 1.54
Pcdha4O88689 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC24.68■■□□□ 1.54
Pcdha4O88689 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Pcdha4O88689 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Pcdha4O88689 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Pcdha4O88689 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC24.67■■□□□ 1.54
Pcdha4O88689 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Pcdha4O88689 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
Pcdha4O88689 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Pcdha4O88689 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
Pcdha4O88689 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
Pcdha4O88689 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
Pcdha4O88689 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Pcdha4O88689 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
Pcdha4O88689 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
Pcdha4O88689 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Pcdha4O88689 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Pcdha4O88689 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC24.64■■□□□ 1.54
Pcdha4O88689 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Pcdha4O88689 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Pcdha4O88689 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms