Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC17.28■□□□□ 0.36
Trbv1A0A0B4J1G7 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trbv1A0A0B4J1G7 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trbv1A0A0B4J1G7 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trbv1A0A0B4J1G7 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trbv1A0A0B4J1G7 Particl-201ENSMUST00000205370 1560 ntBASIC17.28■□□□□ 0.36
Trbv1A0A0B4J1G7 Gm8503-201ENSMUST00000118131 455 ntBASIC17.27■□□□□ 0.36
Trbv1A0A0B4J1G7 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trbv1A0A0B4J1G7 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trbv1A0A0B4J1G7 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trbv1A0A0B4J1G7 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv1A0A0B4J1G7 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv1A0A0B4J1G7 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv1A0A0B4J1G7 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv1A0A0B4J1G7 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC17.26■□□□□ 0.35
Trbv1A0A0B4J1G7 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC17.26■□□□□ 0.35
Trbv1A0A0B4J1G7 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv1A0A0B4J1G7 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv1A0A0B4J1G7 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv1A0A0B4J1G7 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv1A0A0B4J1G7 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC17.25■□□□□ 0.35
Trbv1A0A0B4J1G7 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv1A0A0B4J1G7 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC17.25■□□□□ 0.35
Trbv1A0A0B4J1G7 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Trbv1A0A0B4J1G7 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv1A0A0B4J1G7 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv1A0A0B4J1G7 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trbv1A0A0B4J1G7 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trbv1A0A0B4J1G7 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trbv1A0A0B4J1G7 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Trbv1A0A0B4J1G7 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trbv1A0A0B4J1G7 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trbv1A0A0B4J1G7 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Trbv1A0A0B4J1G7 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trbv1A0A0B4J1G7 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trbv1A0A0B4J1G7 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trbv1A0A0B4J1G7 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC17.23■□□□□ 0.35
Trbv1A0A0B4J1G7 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
Trbv1A0A0B4J1G7 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trbv1A0A0B4J1G7 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trbv1A0A0B4J1G7 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trbv1A0A0B4J1G7 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trbv1A0A0B4J1G7 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trbv1A0A0B4J1G7 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trbv1A0A0B4J1G7 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Trbv1A0A0B4J1G7 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trbv1A0A0B4J1G7 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC17.21■□□□□ 0.35
Trbv1A0A0B4J1G7 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC17.21■□□□□ 0.35
Trbv1A0A0B4J1G7 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
Trbv1A0A0B4J1G7 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trbv1A0A0B4J1G7 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trbv1A0A0B4J1G7 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trbv1A0A0B4J1G7 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trbv1A0A0B4J1G7 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trbv1A0A0B4J1G7 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trbv1A0A0B4J1G7 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC17.2■□□□□ 0.34
Trbv1A0A0B4J1G7 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC17.2■□□□□ 0.34
Trbv1A0A0B4J1G7 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
Trbv1A0A0B4J1G7 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trbv1A0A0B4J1G7 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trbv1A0A0B4J1G7 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC17.19■□□□□ 0.34
Trbv1A0A0B4J1G7 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trbv1A0A0B4J1G7 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trbv1A0A0B4J1G7 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trbv1A0A0B4J1G7 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trbv1A0A0B4J1G7 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trbv1A0A0B4J1G7 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trbv1A0A0B4J1G7 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trbv1A0A0B4J1G7 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trbv1A0A0B4J1G7 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
Trbv1A0A0B4J1G7 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Trbv1A0A0B4J1G7 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trbv1A0A0B4J1G7 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
Trbv1A0A0B4J1G7 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trbv1A0A0B4J1G7 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trbv1A0A0B4J1G7 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Trbv1A0A0B4J1G7 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Trbv1A0A0B4J1G7 Gm43006-201ENSMUST00000197702 1602 ntBASIC17.18■□□□□ 0.34
Trbv1A0A0B4J1G7 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trbv1A0A0B4J1G7 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Trbv1A0A0B4J1G7 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trbv1A0A0B4J1G7 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Trbv1A0A0B4J1G7 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC17.16■□□□□ 0.34
Trbv1A0A0B4J1G7 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC17.16■□□□□ 0.34
Trbv1A0A0B4J1G7 Gm32051-202ENSMUST00000197905 2385 ntBASIC17.16■□□□□ 0.34
Trbv1A0A0B4J1G7 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trbv1A0A0B4J1G7 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trbv1A0A0B4J1G7 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trbv1A0A0B4J1G7 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC17.15■□□□□ 0.34
Trbv1A0A0B4J1G7 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trbv1A0A0B4J1G7 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC17.15■□□□□ 0.34
Trbv1A0A0B4J1G7 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trbv1A0A0B4J1G7 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trbv1A0A0B4J1G7 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.34
Trbv1A0A0B4J1G7 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trbv1A0A0B4J1G7 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC17.14■□□□□ 0.33
Trbv1A0A0B4J1G7 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trbv1A0A0B4J1G7 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trbv1A0A0B4J1G7 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trbv1A0A0B4J1G7 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 11.7 ms