Protein–RNA interactions for Protein: Q91Y16

Pcdha3, Protocadherin alpha 3, mousemouse

Predictions only

Length 942 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha3Q91Y16 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Pcdha3Q91Y16 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Pcdha3Q91Y16 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Pcdha3Q91Y16 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC23.31■■□□□ 1.32
Pcdha3Q91Y16 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Pcdha3Q91Y16 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Pcdha3Q91Y16 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
Pcdha3Q91Y16 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Pcdha3Q91Y16 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
Pcdha3Q91Y16 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Pcdha3Q91Y16 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Pcdha3Q91Y16 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC23.29■■□□□ 1.32
Pcdha3Q91Y16 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC23.28■■□□□ 1.32
Pcdha3Q91Y16 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC23.28■■□□□ 1.32
Pcdha3Q91Y16 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Pcdha3Q91Y16 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
Pcdha3Q91Y16 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Pcdha3Q91Y16 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Pcdha3Q91Y16 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Pcdha3Q91Y16 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Pcdha3Q91Y16 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
Pcdha3Q91Y16 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC23.25■■□□□ 1.31
Pcdha3Q91Y16 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Pcdha3Q91Y16 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Pcdha3Q91Y16 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
Pcdha3Q91Y16 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Pcdha3Q91Y16 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC23.23■■□□□ 1.31
Pcdha3Q91Y16 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Pcdha3Q91Y16 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC23.23■■□□□ 1.31
Pcdha3Q91Y16 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Pcdha3Q91Y16 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Pcdha3Q91Y16 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Pcdha3Q91Y16 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Pcdha3Q91Y16 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Pcdha3Q91Y16 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
Pcdha3Q91Y16 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Pcdha3Q91Y16 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Pcdha3Q91Y16 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
Pcdha3Q91Y16 H3f3aos-201ENSMUST00000097448 2905 ntBASIC23.21■■□□□ 1.31
Pcdha3Q91Y16 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Pcdha3Q91Y16 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Pcdha3Q91Y16 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Pcdha3Q91Y16 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC23.21■■□□□ 1.31
Pcdha3Q91Y16 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Pcdha3Q91Y16 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
Pcdha3Q91Y16 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Pcdha3Q91Y16 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Pcdha3Q91Y16 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Pcdha3Q91Y16 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Pcdha3Q91Y16 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Pcdha3Q91Y16 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Pcdha3Q91Y16 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Pcdha3Q91Y16 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Pcdha3Q91Y16 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC23.19■■□□□ 1.3
Pcdha3Q91Y16 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Pcdha3Q91Y16 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC23.19■■□□□ 1.3
Pcdha3Q91Y16 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC23.19■■□□□ 1.3
Pcdha3Q91Y16 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Pcdha3Q91Y16 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Pcdha3Q91Y16 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Pcdha3Q91Y16 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Pcdha3Q91Y16 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC23.19■■□□□ 1.3
Pcdha3Q91Y16 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Pcdha3Q91Y16 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Pcdha3Q91Y16 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
Pcdha3Q91Y16 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Pcdha3Q91Y16 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC23.17■■□□□ 1.3
Pcdha3Q91Y16 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Pcdha3Q91Y16 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC23.16■■□□□ 1.3
Pcdha3Q91Y16 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
Pcdha3Q91Y16 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Pcdha3Q91Y16 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC23.15■■□□□ 1.3
Pcdha3Q91Y16 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Pcdha3Q91Y16 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
Pcdha3Q91Y16 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC23.14■■□□□ 1.29
Pcdha3Q91Y16 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
Pcdha3Q91Y16 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.29
Pcdha3Q91Y16 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Pcdha3Q91Y16 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
Pcdha3Q91Y16 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
Pcdha3Q91Y16 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Pcdha3Q91Y16 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC23.13■■□□□ 1.29
Pcdha3Q91Y16 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC23.13■■□□□ 1.29
Pcdha3Q91Y16 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Pcdha3Q91Y16 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Pcdha3Q91Y16 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Pcdha3Q91Y16 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Pcdha3Q91Y16 Gm20634-201ENSMUST00000090779 2956 ntBASIC23.13■■□□□ 1.29
Pcdha3Q91Y16 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Pcdha3Q91Y16 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Pcdha3Q91Y16 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Pcdha3Q91Y16 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC23.11■■□□□ 1.29
Pcdha3Q91Y16 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Pcdha3Q91Y16 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
Pcdha3Q91Y16 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC23.11■■□□□ 1.29
Pcdha3Q91Y16 Cap2-205ENSMUST00000225824 1634 ntBASIC23.11■■□□□ 1.29
Pcdha3Q91Y16 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
Pcdha3Q91Y16 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
Pcdha3Q91Y16 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Pcdha3Q91Y16 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Retrieved 100 of 76,532 protein–RNA pairs in 17.1 ms