Protein–RNA interactions for Protein: Q6PR54

Rif1, Telomere-associated protein RIF1, mousemouse

Known RBP Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rif1Q6PR54 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
Rif1Q6PR54 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC19.33■□□□□ 0.69
Rif1Q6PR54 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Rif1Q6PR54 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Rif1Q6PR54 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Rif1Q6PR54 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Rif1Q6PR54 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
Rif1Q6PR54 Gm44428-201ENSMUST00000204474 874 ntBASIC19.32■□□□□ 0.68
Rif1Q6PR54 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rif1Q6PR54 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rif1Q6PR54 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rif1Q6PR54 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC19.31■□□□□ 0.68
Rif1Q6PR54 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Rif1Q6PR54 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC19.31■□□□□ 0.68
Rif1Q6PR54 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Rif1Q6PR54 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Rif1Q6PR54 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rif1Q6PR54 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Rif1Q6PR54 Gm5874-201ENSMUST00000096101 508 ntBASIC19.31■□□□□ 0.68
Rif1Q6PR54 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rif1Q6PR54 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC19.3■□□□□ 0.68
Rif1Q6PR54 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC19.3■□□□□ 0.68
Rif1Q6PR54 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rif1Q6PR54 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Rif1Q6PR54 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rif1Q6PR54 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Rif1Q6PR54 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Rif1Q6PR54 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rif1Q6PR54 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rif1Q6PR54 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rif1Q6PR54 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rif1Q6PR54 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rif1Q6PR54 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC19.28■□□□□ 0.68
Rif1Q6PR54 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC19.28■□□□□ 0.68
Rif1Q6PR54 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rif1Q6PR54 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rif1Q6PR54 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC19.27■□□□□ 0.68
Rif1Q6PR54 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rif1Q6PR54 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rif1Q6PR54 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rif1Q6PR54 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Rif1Q6PR54 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Rif1Q6PR54 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC19.27■□□□□ 0.68
Rif1Q6PR54 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Rif1Q6PR54 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rif1Q6PR54 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rif1Q6PR54 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rif1Q6PR54 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rif1Q6PR54 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rif1Q6PR54 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Rif1Q6PR54 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Rif1Q6PR54 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
Rif1Q6PR54 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
Rif1Q6PR54 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC19.24■□□□□ 0.67
Rif1Q6PR54 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rif1Q6PR54 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rif1Q6PR54 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Rif1Q6PR54 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC19.24■□□□□ 0.67
Rif1Q6PR54 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Rif1Q6PR54 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Rif1Q6PR54 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rif1Q6PR54 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Rif1Q6PR54 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rif1Q6PR54 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Rif1Q6PR54 Gm22238-201ENSMUST00000175222 88 ntBASIC19.23■□□□□ 0.67
Rif1Q6PR54 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Rif1Q6PR54 Golgb1-201ENSMUST00000023534 498 ntBASIC19.23■□□□□ 0.67
Rif1Q6PR54 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rif1Q6PR54 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Rif1Q6PR54 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Rif1Q6PR54 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Rif1Q6PR54 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC19.22■□□□□ 0.67
Rif1Q6PR54 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rif1Q6PR54 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Rif1Q6PR54 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Rif1Q6PR54 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rif1Q6PR54 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rif1Q6PR54 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC19.21■□□□□ 0.67
Rif1Q6PR54 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Rif1Q6PR54 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rif1Q6PR54 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rif1Q6PR54 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rif1Q6PR54 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rif1Q6PR54 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rif1Q6PR54 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC19.21■□□□□ 0.66
Rif1Q6PR54 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rif1Q6PR54 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Rif1Q6PR54 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC19.2■□□□□ 0.66
Rif1Q6PR54 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Rif1Q6PR54 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Rif1Q6PR54 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Rif1Q6PR54 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rif1Q6PR54 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rif1Q6PR54 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Rif1Q6PR54 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC19.19■□□□□ 0.66
Rif1Q6PR54 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rif1Q6PR54 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Rif1Q6PR54 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rif1Q6PR54 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rif1Q6PR54 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 54 ms