Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col7a1Q63870 Gm12922-201ENSMUST00000120626 809 ntBASIC19.45■□□□□ 0.7
Col7a1Q63870 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC19.45■□□□□ 0.7
Col7a1Q63870 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Col7a1Q63870 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Col7a1Q63870 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col7a1Q63870 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col7a1Q63870 Gm12821-201ENSMUST00000120022 600 ntBASIC19.44■□□□□ 0.7
Col7a1Q63870 Gm18284-201ENSMUST00000172604 624 ntBASIC19.44■□□□□ 0.7
Col7a1Q63870 Appbp2os-202ENSMUST00000206972 447 ntBASIC19.44■□□□□ 0.7
Col7a1Q63870 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col7a1Q63870 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col7a1Q63870 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col7a1Q63870 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Col7a1Q63870 AC116713.1-201ENSMUST00000215074 430 ntBASIC19.43■□□□□ 0.7
Col7a1Q63870 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Col7a1Q63870 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC19.43■□□□□ 0.7
Col7a1Q63870 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col7a1Q63870 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col7a1Q63870 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC19.42■□□□□ 0.7
Col7a1Q63870 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Col7a1Q63870 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col7a1Q63870 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col7a1Q63870 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Col7a1Q63870 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC19.39■□□□□ 0.7
Col7a1Q63870 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col7a1Q63870 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
Col7a1Q63870 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col7a1Q63870 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Col7a1Q63870 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col7a1Q63870 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC19.38■□□□□ 0.69
Col7a1Q63870 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col7a1Q63870 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
Col7a1Q63870 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC19.38■□□□□ 0.69
Col7a1Q63870 Gm22238-201ENSMUST00000175222 88 ntBASIC19.38■□□□□ 0.69
Col7a1Q63870 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
Col7a1Q63870 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Col7a1Q63870 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col7a1Q63870 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Col7a1Q63870 Gm7417-201ENSMUST00000192950 473 ntBASIC19.37■□□□□ 0.69
Col7a1Q63870 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col7a1Q63870 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col7a1Q63870 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
Col7a1Q63870 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col7a1Q63870 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col7a1Q63870 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col7a1Q63870 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC19.36■□□□□ 0.69
Col7a1Q63870 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC19.36■□□□□ 0.69
Col7a1Q63870 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col7a1Q63870 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col7a1Q63870 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC19.35■□□□□ 0.69
Col7a1Q63870 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC19.35■□□□□ 0.69
Col7a1Q63870 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Col7a1Q63870 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC19.35■□□□□ 0.69
Col7a1Q63870 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col7a1Q63870 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Col7a1Q63870 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Col7a1Q63870 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Col7a1Q63870 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC19.34■□□□□ 0.69
Col7a1Q63870 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col7a1Q63870 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Col7a1Q63870 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col7a1Q63870 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col7a1Q63870 Gm14121-201ENSMUST00000121441 1380 ntBASIC19.33■□□□□ 0.69
Col7a1Q63870 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col7a1Q63870 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC19.32■□□□□ 0.68
Col7a1Q63870 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col7a1Q63870 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Col7a1Q63870 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
Col7a1Q63870 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Col7a1Q63870 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC19.31■□□□□ 0.68
Col7a1Q63870 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC19.31■□□□□ 0.68
Col7a1Q63870 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col7a1Q63870 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Col7a1Q63870 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col7a1Q63870 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col7a1Q63870 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col7a1Q63870 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC19.29■□□□□ 0.68
Col7a1Q63870 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Col7a1Q63870 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Col7a1Q63870 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC19.28■□□□□ 0.68
Col7a1Q63870 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col7a1Q63870 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col7a1Q63870 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Col7a1Q63870 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col7a1Q63870 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC19.28■□□□□ 0.68
Col7a1Q63870 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col7a1Q63870 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC19.28■□□□□ 0.68
Col7a1Q63870 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col7a1Q63870 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col7a1Q63870 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col7a1Q63870 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Col7a1Q63870 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC19.27■□□□□ 0.67
Col7a1Q63870 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Col7a1Q63870 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
Col7a1Q63870 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Col7a1Q63870 Gm45417-201ENSMUST00000209533 758 ntBASIC19.26■□□□□ 0.67
Col7a1Q63870 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col7a1Q63870 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC19.25■□□□□ 0.67
Col7a1Q63870 Golgb1-201ENSMUST00000023534 498 ntBASIC19.25■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 19.7 ms