Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cdh11P55288 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cdh11P55288 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Cdh11P55288 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC20.17■□□□□ 0.82
Cdh11P55288 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cdh11P55288 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC20.16■□□□□ 0.82
Cdh11P55288 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cdh11P55288 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cdh11P55288 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cdh11P55288 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cdh11P55288 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
Cdh11P55288 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC20.14■□□□□ 0.81
Cdh11P55288 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Cdh11P55288 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cdh11P55288 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Cdh11P55288 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Cdh11P55288 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC20.13■□□□□ 0.81
Cdh11P55288 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Cdh11P55288 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cdh11P55288 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cdh11P55288 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cdh11P55288 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC20.13■□□□□ 0.81
Cdh11P55288 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cdh11P55288 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cdh11P55288 Mir6538-201ENSMUST00000183713 110 ntBASIC20.12■□□□□ 0.81
Cdh11P55288 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cdh11P55288 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cdh11P55288 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Cdh11P55288 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Cdh11P55288 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
Cdh11P55288 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC20.12■□□□□ 0.81
Cdh11P55288 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cdh11P55288 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cdh11P55288 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cdh11P55288 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cdh11P55288 Gm11175-201ENSMUST00000116172 543 ntBASIC20.11■□□□□ 0.81
Cdh11P55288 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC20.11■□□□□ 0.81
Cdh11P55288 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Cdh11P55288 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cdh11P55288 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Cdh11P55288 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cdh11P55288 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cdh11P55288 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cdh11P55288 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cdh11P55288 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Cdh11P55288 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC20.09■□□□□ 0.81
Cdh11P55288 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Cdh11P55288 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Cdh11P55288 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Cdh11P55288 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Cdh11P55288 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cdh11P55288 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cdh11P55288 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC20.07■□□□□ 0.8
Cdh11P55288 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cdh11P55288 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Cdh11P55288 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Cdh11P55288 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cdh11P55288 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cdh11P55288 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cdh11P55288 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cdh11P55288 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cdh11P55288 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Cdh11P55288 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC20.05■□□□□ 0.8
Cdh11P55288 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cdh11P55288 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC20.05■□□□□ 0.8
Cdh11P55288 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cdh11P55288 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cdh11P55288 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cdh11P55288 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cdh11P55288 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cdh11P55288 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cdh11P55288 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
Cdh11P55288 Gm4799-201ENSMUST00000095396 657 ntBASIC20.04■□□□□ 0.8
Cdh11P55288 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cdh11P55288 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC20.04■□□□□ 0.8
Cdh11P55288 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC20.03■□□□□ 0.8
Cdh11P55288 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cdh11P55288 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cdh11P55288 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cdh11P55288 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Cdh11P55288 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Cdh11P55288 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Cdh11P55288 Gm14121-201ENSMUST00000121441 1380 ntBASIC20.02■□□□□ 0.8
Cdh11P55288 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Cdh11P55288 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Cdh11P55288 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Cdh11P55288 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
Cdh11P55288 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Cdh11P55288 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Cdh11P55288 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Cdh11P55288 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Cdh11P55288 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Cdh11P55288 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Cdh11P55288 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Cdh11P55288 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Cdh11P55288 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
Cdh11P55288 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC20■□□□□ 0.79
Cdh11P55288 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Cdh11P55288 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC20■□□□□ 0.79
Cdh11P55288 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 87.5 ms