Protein–RNA interactions for Protein: J3QNX5

Shisa8, Cysteine-knot AMPAR-modulating protein 39, mousemouse

Predictions only

Length 399 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shisa8J3QNX5 Gm26766-202ENSMUST00000227544 2347 ntBASIC20.32■□□□□ 0.84
Shisa8J3QNX5 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Shisa8J3QNX5 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Shisa8J3QNX5 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Shisa8J3QNX5 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Shisa8J3QNX5 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC20.31■□□□□ 0.84
Shisa8J3QNX5 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC20.3■□□□□ 0.84
Shisa8J3QNX5 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Shisa8J3QNX5 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Shisa8J3QNX5 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Shisa8J3QNX5 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Shisa8J3QNX5 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Shisa8J3QNX5 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC20.29■□□□□ 0.84
Shisa8J3QNX5 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Shisa8J3QNX5 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Shisa8J3QNX5 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Shisa8J3QNX5 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC20.28■□□□□ 0.84
Shisa8J3QNX5 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Shisa8J3QNX5 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Shisa8J3QNX5 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC20.28■□□□□ 0.84
Shisa8J3QNX5 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Shisa8J3QNX5 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Shisa8J3QNX5 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Shisa8J3QNX5 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Shisa8J3QNX5 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Shisa8J3QNX5 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Shisa8J3QNX5 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Shisa8J3QNX5 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Shisa8J3QNX5 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Shisa8J3QNX5 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Shisa8J3QNX5 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Shisa8J3QNX5 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Shisa8J3QNX5 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Shisa8J3QNX5 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Shisa8J3QNX5 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Shisa8J3QNX5 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC20.24■□□□□ 0.83
Shisa8J3QNX5 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC20.24■□□□□ 0.83
Shisa8J3QNX5 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Shisa8J3QNX5 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Shisa8J3QNX5 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Shisa8J3QNX5 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Shisa8J3QNX5 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
Shisa8J3QNX5 Gm37136-201ENSMUST00000194368 194 ntBASIC20.23■□□□□ 0.83
Shisa8J3QNX5 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Shisa8J3QNX5 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Shisa8J3QNX5 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Shisa8J3QNX5 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC20.22■□□□□ 0.83
Shisa8J3QNX5 Gm13042-201ENSMUST00000119244 1955 ntBASIC20.22■□□□□ 0.83
Shisa8J3QNX5 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Shisa8J3QNX5 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Shisa8J3QNX5 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Shisa8J3QNX5 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Shisa8J3QNX5 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Shisa8J3QNX5 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Shisa8J3QNX5 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC20.21■□□□□ 0.83
Shisa8J3QNX5 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Shisa8J3QNX5 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Shisa8J3QNX5 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
Shisa8J3QNX5 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC20.2■□□□□ 0.82
Shisa8J3QNX5 Gm38160-201ENSMUST00000193090 2499 ntBASIC20.19■□□□□ 0.82
Shisa8J3QNX5 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Shisa8J3QNX5 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Shisa8J3QNX5 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Shisa8J3QNX5 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Shisa8J3QNX5 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Shisa8J3QNX5 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Shisa8J3QNX5 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Shisa8J3QNX5 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Shisa8J3QNX5 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Shisa8J3QNX5 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Shisa8J3QNX5 Nkain2-201ENSMUST00000092602 558 ntBASIC20.17■□□□□ 0.82
Shisa8J3QNX5 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Shisa8J3QNX5 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Shisa8J3QNX5 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Shisa8J3QNX5 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Shisa8J3QNX5 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Shisa8J3QNX5 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC20.17■□□□□ 0.82
Shisa8J3QNX5 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Shisa8J3QNX5 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Shisa8J3QNX5 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Shisa8J3QNX5 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Shisa8J3QNX5 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
Shisa8J3QNX5 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Shisa8J3QNX5 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC20.15■□□□□ 0.82
Shisa8J3QNX5 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Shisa8J3QNX5 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Shisa8J3QNX5 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Shisa8J3QNX5 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Shisa8J3QNX5 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Shisa8J3QNX5 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
Shisa8J3QNX5 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Shisa8J3QNX5 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Shisa8J3QNX5 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Shisa8J3QNX5 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Shisa8J3QNX5 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Shisa8J3QNX5 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Shisa8J3QNX5 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Shisa8J3QNX5 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC20.13■□□□□ 0.81
Shisa8J3QNX5 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Shisa8J3QNX5 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 16.3 ms