Protein–RNA interactions for Protein: A0A075B5Z8

Trav6-1, T cell receptor alpha variable 6-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-1A0A075B5Z8 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.46
Trav6-1A0A075B5Z8 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Trav6-1A0A075B5Z8 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trav6-1A0A075B5Z8 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trav6-1A0A075B5Z8 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trav6-1A0A075B5Z8 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC17.95■□□□□ 0.46
Trav6-1A0A075B5Z8 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trav6-1A0A075B5Z8 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trav6-1A0A075B5Z8 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC17.95■□□□□ 0.46
Trav6-1A0A075B5Z8 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trav6-1A0A075B5Z8 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trav6-1A0A075B5Z8 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trav6-1A0A075B5Z8 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trav6-1A0A075B5Z8 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC17.94■□□□□ 0.46
Trav6-1A0A075B5Z8 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trav6-1A0A075B5Z8 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC17.94■□□□□ 0.46
Trav6-1A0A075B5Z8 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trav6-1A0A075B5Z8 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trav6-1A0A075B5Z8 Gm26766-202ENSMUST00000227544 2347 ntBASIC17.92■□□□□ 0.46
Trav6-1A0A075B5Z8 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trav6-1A0A075B5Z8 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Trav6-1A0A075B5Z8 Dmtn-209ENSMUST00000228295 2572 ntBASIC17.92■□□□□ 0.46
Trav6-1A0A075B5Z8 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Trav6-1A0A075B5Z8 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
Trav6-1A0A075B5Z8 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC17.91■□□□□ 0.46
Trav6-1A0A075B5Z8 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC17.91■□□□□ 0.46
Trav6-1A0A075B5Z8 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC17.91■□□□□ 0.46
Trav6-1A0A075B5Z8 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trav6-1A0A075B5Z8 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trav6-1A0A075B5Z8 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC17.91■□□□□ 0.46
Trav6-1A0A075B5Z8 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trav6-1A0A075B5Z8 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trav6-1A0A075B5Z8 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Trav6-1A0A075B5Z8 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trav6-1A0A075B5Z8 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trav6-1A0A075B5Z8 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trav6-1A0A075B5Z8 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.46
Trav6-1A0A075B5Z8 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Trav6-1A0A075B5Z8 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trav6-1A0A075B5Z8 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trav6-1A0A075B5Z8 Gm42809-201ENSMUST00000198429 1138 ntBASIC17.89■□□□□ 0.45
Trav6-1A0A075B5Z8 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trav6-1A0A075B5Z8 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trav6-1A0A075B5Z8 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Trav6-1A0A075B5Z8 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Trav6-1A0A075B5Z8 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trav6-1A0A075B5Z8 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trav6-1A0A075B5Z8 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trav6-1A0A075B5Z8 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trav6-1A0A075B5Z8 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trav6-1A0A075B5Z8 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trav6-1A0A075B5Z8 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trav6-1A0A075B5Z8 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Trav6-1A0A075B5Z8 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trav6-1A0A075B5Z8 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trav6-1A0A075B5Z8 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Trav6-1A0A075B5Z8 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Trav6-1A0A075B5Z8 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC17.86■□□□□ 0.45
Trav6-1A0A075B5Z8 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trav6-1A0A075B5Z8 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Trav6-1A0A075B5Z8 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trav6-1A0A075B5Z8 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trav6-1A0A075B5Z8 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trav6-1A0A075B5Z8 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Trav6-1A0A075B5Z8 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC17.84■□□□□ 0.45
Trav6-1A0A075B5Z8 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC17.84■□□□□ 0.45
Trav6-1A0A075B5Z8 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Trav6-1A0A075B5Z8 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC17.84■□□□□ 0.45
Trav6-1A0A075B5Z8 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC17.84■□□□□ 0.45
Trav6-1A0A075B5Z8 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trav6-1A0A075B5Z8 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC17.83■□□□□ 0.45
Trav6-1A0A075B5Z8 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trav6-1A0A075B5Z8 Gm28731-201ENSMUST00000185564 1569 ntBASIC17.83■□□□□ 0.45
Trav6-1A0A075B5Z8 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trav6-1A0A075B5Z8 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC17.83■□□□□ 0.44
Trav6-1A0A075B5Z8 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trav6-1A0A075B5Z8 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trav6-1A0A075B5Z8 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Trav6-1A0A075B5Z8 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trav6-1A0A075B5Z8 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Trav6-1A0A075B5Z8 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Trav6-1A0A075B5Z8 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Trav6-1A0A075B5Z8 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trav6-1A0A075B5Z8 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trav6-1A0A075B5Z8 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC17.81■□□□□ 0.44
Trav6-1A0A075B5Z8 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trav6-1A0A075B5Z8 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trav6-1A0A075B5Z8 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trav6-1A0A075B5Z8 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trav6-1A0A075B5Z8 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Trav6-1A0A075B5Z8 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav6-1A0A075B5Z8 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav6-1A0A075B5Z8 AC164433.2-201ENSMUST00000226346 1701 ntBASIC17.79■□□□□ 0.44
Trav6-1A0A075B5Z8 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav6-1A0A075B5Z8 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Trav6-1A0A075B5Z8 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav6-1A0A075B5Z8 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Trav6-1A0A075B5Z8 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav6-1A0A075B5Z8 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
Trav6-1A0A075B5Z8 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC17.78■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms